Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 2.2e-30 134.8 61 100.0
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 2.1e-28 128.3 61 95.1
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 4.8e-17 90.5 61 70.5
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 5.9e-15 83.6 61 62.3
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 1.7e-14 82.0 61 63.9
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 2.5e-13 78.2 61 62.3
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 7.2e-13 76.6 61 54.1
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 3.6e-12 74.3 60 55.0
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 6.1e-12 73.6 60 55.0
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 1.0e-11 72.8 46 67.4
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 1.4e-11 72.4 41 78.0
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 3.9e-11 70.9 44 68.2
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 5.1e-11 70.5 41 73.2
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 6.7e-11 70.1 44 68.2
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 6.7e-11 70.1 41 73.2
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 8.8e-11 69.7 59 55.9
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.5e-10 68.9 61 54.1
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 5.7e-10 67.0 41 70.7
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 5.7e-10 67.0 41 70.7
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 1.3e-09 65.9 44 65.9
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 1.3e-09 65.9 43 65.1
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 1.3e-09 65.9 43 65.1
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 1.7e-09 65.5 59 52.5
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.7e-09 65.5 41 70.7
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 2.2e-09 65.1 45 60.0
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 2.8e-09 64.7 51 58.8
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 3.7e-09 64.3 44 63.6
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 6.3e-09 63.5 44 63.6
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 6.3e-09 63.5 44 63.6
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 6.3e-09 63.5 44 63.6
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.1e-08 62.8 43 65.1
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.1e-08 62.8 43 65.1
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 2.4e-08 61.6 34 73.5
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 2.6e-07 58.2 50 48.0
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 2.6e-07 58.2 46 58.7
Sed0002148 Sechium edule HOM05D008584 ORTHO05D010813 3.4e-07 57.8 53 58.5
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 4.5e-07 57.4 37 59.5
CsaV3_1G030850 Cucumis sativus L. HOM05D008584 ORTHO05D010813 5.9e-07 57.0 40 60.0
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 2.9e-06 54.7 46 50.0
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 3.8e-06 54.3 41 51.2
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 3.8e-06 54.3 41 51.2
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 3.8e-06 54.3 41 51.2
Zm00001eb122380 Zea mays HOM05D008584 ORTHO05D010813 6.5e-06 53.5 33 63.6
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 8.5e-06 53.1 47 42.6
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 8.5e-06 53.1 37 54.1


User provided reference genes

Program Settings