Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 9.8e-149 530.4 331 100.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 4.5e-53 212.6 212 53.8
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 1.7e-47 194.1 218 46.3
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 1.2e-45 188.0 207 52.2
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 7.8e-45 185.3 197 54.8
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 3.0e-44 183.3 214 50.0
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 5.0e-44 182.6 206 48.5
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 8.6e-44 181.8 204 51.5
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 5.6e-43 179.1 193 52.8
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.3e-41 173.7 194 52.6
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 4.0e-41 172.9 193 52.3
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.2e-40 171.4 209 48.8
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.6e-40 170.2 152 55.3
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 3.4e-40 169.9 221 47.5
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 9.8e-40 168.3 152 55.3
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 1.7e-39 167.5 199 45.7
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.7e-39 167.5 211 49.3
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.9e-38 164.1 208 48.1
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.9e-38 164.1 208 48.1
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 5.4e-38 162.5 184 50.0
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 7.0e-38 162.2 184 49.5
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.2e-37 161.4 151 55.0
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.6e-37 161.0 192 50.0
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.6e-37 161.0 199 46.7
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.0e-37 160.6 151 55.6
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 6.0e-37 159.1 168 50.0
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.7e-36 157.5 204 44.6
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.3e-36 157.1 200 43.5
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 2.3e-36 157.1 181 49.2
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 6.6e-36 155.6 170 45.9
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 6.6e-36 155.6 194 46.9
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.1e-35 154.8 158 51.9
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.5e-35 153.7 137 55.5
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 2.5e-35 153.7 190 47.9
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 3.3e-35 153.3 158 49.4
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 5.6e-35 152.5 208 42.3
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 7.3e-35 152.1 171 50.9
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.1e-34 150.6 163 50.3
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 2.8e-34 150.2 223 39.0
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 6.2e-34 149.1 159 49.7
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 6.2e-34 149.1 165 49.1
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 8.1e-34 148.7 165 49.1
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.4e-33 147.9 205 42.4
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 6.8e-33 145.6 154 51.3
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 8.9e-33 145.2 174 46.6
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 2.0e-32 144.1 143 53.1
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 3.4e-32 143.3 158 50.6
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 4.4e-32 142.9 148 48.0
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 9.8e-32 141.7 170 45.9
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 6.4e-31 139.0 181 41.4
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.1e-30 138.3 164 45.7
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 3.2e-30 136.7 140 49.3
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.2e-29 134.8 165 46.1
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.6e-29 134.4 196 42.3
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 2.1e-29 134.0 184 39.7
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.0e-28 131.7 167 41.3
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 8.6e-28 128.6 161 42.2
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 8.6e-28 128.6 165 42.4
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 1.1e-27 128.3 136 54.4
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.9e-27 127.5 163 43.6
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 2.5e-27 127.1 163 43.6
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 3.3e-27 126.7 163 42.9
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 4.3e-27 126.3 158 43.0
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 4.3e-27 126.3 163 42.9
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 4.3e-27 126.3 163 42.9
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 4.3e-27 126.3 167 46.1
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 9.5e-27 125.2 147 44.9
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.2e-26 124.8 137 48.2
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.1e-26 124.0 112 50.9
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.6e-26 123.2 162 43.8
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.4e-25 121.3 207 37.7
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 3.1e-25 120.2 158 41.1
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 4.0e-25 119.8 158 41.1
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 5.2e-25 119.4 158 41.1
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.5e-24 117.9 158 40.5
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 5.8e-24 115.9 167 37.1
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 1.3e-23 114.8 143 43.4
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 2.2e-23 114.0 142 40.1
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 2.9e-23 113.6 217 34.1
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.4e-23 112.5 157 41.4
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.4e-22 111.3 160 41.9
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.9e-22 110.9 117 46.2
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 1.6e-21 107.8 194 40.7
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 2.1e-21 107.5 152 42.8
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.5e-21 106.7 160 38.1
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.7e-20 104.4 157 39.5
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.3e-20 104.0 99 56.6
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 3.0e-20 103.6 123 46.3
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 8.6e-20 102.1 165 41.8
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.2e-18 98.2 150 38.0
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.4e-17 94.7 92 52.2
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.4e-17 94.0 131 39.7
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 3.1e-17 93.6 156 35.9
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 6.9e-17 92.4 136 39.7
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 1.5e-16 91.3 135 37.8
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.6e-16 90.5 136 39.0
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 2.6e-16 90.5 93 50.5
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 4.4e-16 89.7 131 38.9
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 4.4e-16 89.7 131 38.9
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 4.4e-16 89.7 92 51.1
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 5.8e-16 89.4 136 39.0
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 7.6e-16 89.0 95 50.5
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 9.9e-16 88.6 131 38.2
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 9.9e-16 88.6 131 38.2
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.9e-15 87.0 95 48.4
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 1.1e-14 85.1 132 39.4
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 7.1e-14 82.4 94 46.8
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 5.1e-12 76.3 167 30.5
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.5e-11 73.9 147 33.3
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 9.6e-11 72.0 164 28.7
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.8e-09 67.8 144 32.6
Cpa.g.sc159.25 Carica papaya HOM05D005423 ORTHO05D006223 2.4e-09 67.4 92 41.3
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 4.0e-09 66.6 140 35.7
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 1.3e-07 61.6 142 32.4
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 1.7e-07 61.2 54 57.4
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-07 60.8 61 47.5
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 3.8e-07 60.1 142 31.7
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.8e-07 60.1 182 28.0
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 4.9e-07 59.7 50 52.0
FAN25G3864 Fragaria x ananassa HOM05D046692 ORTHO05D006223 6.4e-07 59.3 84 40.5
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 6.4e-07 59.3 156 26.9
FAN09G3285 Fragaria x ananassa HOM05D046692 ORTHO05D006223 1.4e-06 58.2 84 41.7
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 1.9e-06 57.8 71 50.7
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.9e-06 57.8 69 49.3
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 2.4e-06 57.4 119 31.9
FAN26G0124 Fragaria x ananassa HOM05D005784 ORTHO05D007803 4.2e-06 56.6 75 41.3
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 4.2e-06 56.6 171 26.9
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 4.2e-06 56.6 160 27.5
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.4e-06 56.2 67 49.3
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.4e-06 56.2 67 49.3


User provided reference genes

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