Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 3.4e-237 824.7 442 100.0
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.3e-180 636.7 441 78.9
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 4.1e-150 535.4 405 74.3
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 4.2e-147 525.4 401 74.1
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 1.2e-141 507.3 410 72.2
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 2.2e-135 486.5 449 61.9
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 5.4e-134 481.9 452 61.9
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.5e-131 473.8 412 64.3
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.5e-131 473.0 410 66.1
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 8.0e-130 468.0 410 64.1
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 8.0e-130 468.0 410 63.9
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 8.9e-129 464.5 410 63.2
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.4e-128 462.2 409 64.8
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 3.7e-127 459.1 300 82.7
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 4.9e-127 458.8 423 63.4
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 1.8e-126 456.8 409 64.5
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 1.8e-126 456.8 448 59.4
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.2e-125 454.1 407 63.1
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 2.0e-125 453.4 412 63.8
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 6.6e-124 448.4 456 58.6
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 4.3e-123 445.7 418 61.5
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 9.5e-123 444.5 407 63.9
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.8e-121 440.3 349 68.2
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 5.8e-120 435.3 411 62.0
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 2.2e-119 433.3 414 62.1
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 2.4e-118 429.9 414 61.6
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 5.4e-118 428.7 410 60.7
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 3.5e-117 426.0 454 57.0
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 8.9e-113 411.4 493 54.0
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 4.4e-112 409.1 412 56.8
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 2.2e-111 406.8 420 57.9
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 9.2e-110 401.4 456 56.4
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.5e-107 393.3 448 53.3
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 5.6e-107 392.1 409 56.0
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 1.6e-106 390.6 449 53.9
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 3.1e-105 386.3 400 56.8
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 8.9e-105 384.8 353 61.8
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 2.0e-104 383.6 405 56.5
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 2.6e-104 383.3 301 68.8
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 2.6e-104 383.3 404 55.2
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 9.9e-104 381.3 406 57.9
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 3.2e-102 376.3 405 54.6
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.2e-102 376.3 415 55.9
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 7.1e-102 375.2 408 53.2
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 9.2e-102 374.8 453 53.2
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.7e-101 373.2 417 55.9
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 7.8e-101 371.7 409 55.3
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.7e-100 370.5 411 55.5
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 3.9e-100 369.4 411 55.5
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 1.9e-99 367.1 408 53.9
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 9.6e-99 364.8 422 51.2
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 4.7e-98 362.5 411 54.5
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 8.1e-98 361.7 408 55.9
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 8.1e-98 361.7 411 54.0
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 8.9e-97 358.2 420 53.1
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 2.6e-96 356.7 304 66.1
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 3.4e-96 356.3 376 55.3
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 4.4e-96 355.9 409 53.3
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 3.8e-95 352.8 285 66.7
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 3.8e-95 352.8 409 53.1
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 2.1e-93 347.1 481 48.2
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 3.0e-92 343.2 421 55.3
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 3.3e-91 339.7 299 61.5
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 9.6e-91 338.2 414 50.2
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 8.1e-90 335.1 419 52.7
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 1.4e-89 334.3 400 53.0
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 2.6e-88 330.1 411 51.1
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 2.4e-86 323.6 393 51.4
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 7.1e-86 322.0 438 47.9
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 6.6e-84 315.5 404 47.8
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.6e-82 310.8 404 48.0
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.6e-82 309.7 308 56.2
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 4.0e-81 306.2 337 54.0
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.2e-80 304.7 450 48.9
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 4.5e-80 302.8 425 46.8
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 3.8e-79 299.7 336 53.0
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 2.7e-77 293.5 335 55.2
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 5.6e-75 285.8 299 53.5
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 8.1e-74 282.0 292 59.2
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 6.9e-73 278.9 368 49.7
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.0e-72 277.3 398 49.2
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 1.3e-71 274.6 401 47.9
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 2.2e-71 273.9 325 52.9
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 6.5e-71 272.3 324 54.9
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 1.9e-70 270.8 407 42.8
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 3.2e-70 270.0 315 51.7
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 9.3e-70 268.5 403 48.4
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.2e-69 268.1 263 62.7
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 2.1e-69 267.3 363 49.9
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 4.6e-69 266.2 322 52.2
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 3.9e-68 263.1 340 50.6
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 1.9e-67 260.8 425 44.5
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 1.6e-66 257.7 359 49.3
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 2.1e-66 257.3 349 49.9
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 2.8e-66 256.9 346 48.0
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 3.1e-65 253.4 324 50.0
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.0e-52 211.8 372 43.3
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 1.0e-52 211.8 389 43.7
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 2.2e-50 204.1 331 42.0
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 1.1e-49 201.8 331 42.3
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 1.8e-49 201.1 327 41.9
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 9.1e-49 198.7 325 41.8
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 2.6e-48 197.2 327 41.3
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 4.5e-48 196.4 398 39.2
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 4.5e-48 196.4 280 44.6
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 7.7e-48 195.7 331 41.1
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 7.7e-48 195.7 331 41.1
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 7.7e-48 195.7 274 52.2
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 1.0e-47 195.3 330 40.9
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 5.0e-47 193.0 351 39.6
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.4e-46 191.4 331 40.8
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 4.2e-46 189.9 327 40.7
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 8.8e-44 182.2 273 45.8
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.1e-43 181.8 326 40.5
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 3.3e-43 180.3 326 41.1
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 8.2e-42 175.6 327 40.7
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 9.1e-41 172.2 193 54.4
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.2e-40 171.8 327 40.4
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.2e-39 167.5 325 38.2
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 4.0e-36 156.8 333 37.8
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 5.7e-35 152.9 319 38.9
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.6e-32 144.8 321 34.6
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 4.0e-28 130.2 209 41.6
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 8.3e-26 122.5 275 35.6
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 5.9e-24 116.3 253 37.2
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 2.5e-22 110.9 230 36.5
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 5.5e-22 109.8 126 54.8
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.3e-20 104.4 302 32.5
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 4.4e-19 100.1 173 37.6
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 5.7e-19 99.8 143 48.3
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 1.4e-17 95.1 189 36.0
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 2.4e-17 94.4 129 47.3
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 9.1e-17 92.4 172 36.0
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 2.9e-15 87.4 182 36.8
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 5.0e-15 86.7 55 78.2
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 5.7e-11 73.2 97 43.3
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 1.4e-09 68.6 103 48.5
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 3.5e-08 63.9 61 50.8
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 3.5e-08 63.9 61 50.8
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 7.8e-08 62.8 58 51.7


User provided reference genes

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