Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 5.7e-107 391.0 204 100.0
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 6.2e-77 291.2 204 76.5
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 9.0e-52 207.6 206 56.8
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 4.9e-50 201.8 208 55.8
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 3.2e-49 199.1 206 56.8
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 3.2e-49 199.1 206 55.8
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 4.2e-49 198.7 209 55.0
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-48 196.4 208 52.9
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 7.9e-48 194.5 202 56.4
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 2.5e-46 189.5 208 52.9
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 4.3e-46 188.7 206 52.4
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 7.4e-46 188.0 205 52.7
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.4e-46 188.0 198 53.0
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 2.4e-44 183.0 194 56.2
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.7e-42 176.8 201 54.2
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.7e-42 176.8 213 52.1
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.9e-42 176.0 193 52.3
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.0e-42 175.3 195 54.9
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.5e-42 174.5 203 52.2
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 1.1e-41 174.1 194 53.1
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.9e-41 173.3 203 51.7
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.5e-41 172.9 209 50.2
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-41 172.9 203 51.7
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.2e-41 172.6 188 52.1
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 5.5e-41 171.8 241 45.2
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.2e-41 171.4 195 53.8
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 9.3e-41 171.0 195 53.8
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 9.3e-41 171.0 195 53.8
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.3e-41 171.0 203 52.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-40 170.6 203 51.2
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-40 169.9 203 51.2
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.6e-40 168.7 203 51.2
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 7.9e-40 167.9 199 50.3
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.9e-40 167.9 203 51.2
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-39 167.5 203 50.7
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.3e-39 166.4 195 53.3
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 5.1e-39 165.2 173 55.5
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 8.7e-39 164.5 199 50.3
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 8.7e-39 164.5 203 51.2
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-38 163.3 199 48.7
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.6e-37 160.2 208 49.0
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 6.3e-37 158.3 202 49.5
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.3e-37 158.3 208 49.0
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.8e-36 156.8 199 45.7
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.4e-36 156.4 199 46.7
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.1e-36 156.0 192 48.4
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.2e-35 154.1 199 46.2
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 3.4e-35 152.5 204 46.6
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 3.8e-34 149.1 206 46.1
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.1e-33 147.5 193 45.1
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 7.2e-33 144.8 233 43.3
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 9.4e-33 144.4 149 53.7
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 9.4e-33 144.4 197 46.7
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 9.4e-33 144.4 202 45.0
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.2e-32 144.1 205 45.9
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 7.9e-32 141.4 199 46.2
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 7.9e-32 141.4 158 49.4
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.3e-31 139.8 204 44.6
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 5.1e-31 138.7 184 47.8
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 5.1e-31 138.7 172 51.7
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 5.1e-31 138.7 191 45.0
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 5.1e-31 138.7 198 43.9
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 6.7e-31 138.3 200 44.5
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 8.8e-31 137.9 199 43.7
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.5e-30 137.1 191 42.4
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 7.4e-30 134.8 186 46.8
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 9.7e-30 134.4 192 42.7
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 2.2e-29 133.3 199 42.2
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-29 132.9 199 43.7
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 3.7e-29 132.5 228 40.4
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 6.3e-29 131.7 203 42.4
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 6.3e-29 131.7 205 45.4
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 6.3e-29 131.7 204 41.7
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 1.8e-28 130.2 199 41.7
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 4.1e-28 129.0 200 41.5
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 6.9e-28 128.3 200 47.0
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.2e-27 127.5 203 41.4
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 1.2e-27 127.5 203 43.8
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.0e-26 124.4 207 41.5
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.7e-26 123.6 155 49.0
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 3.8e-26 122.5 117 55.6
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 3.8e-26 122.5 198 39.4
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.1e-25 120.9 203 43.3
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-25 120.6 153 47.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-25 120.6 153 47.7
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.4e-25 120.6 190 44.7
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 9.4e-25 117.9 198 39.9
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-24 117.1 198 39.9
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.6e-24 115.9 193 39.9
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 4.7e-24 115.5 202 41.1
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 7.9e-24 114.8 198 39.4
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 7.9e-24 114.8 198 39.4
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.8e-23 113.6 196 40.3
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 8.8e-23 111.3 205 40.5
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.6e-22 109.8 202 39.6
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 2.6e-22 109.8 201 38.3
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 2.6e-22 109.8 201 38.3
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.6e-22 109.8 198 40.9
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 7.4e-22 108.2 188 40.4
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 7.4e-22 108.2 174 43.7
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.7e-21 107.1 196 42.3
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.2e-21 106.7 204 40.7
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.2e-21 106.7 199 40.2
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.8e-21 105.5 200 40.5
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.8e-21 105.5 200 41.0
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.1e-20 104.4 204 36.3
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 1.8e-20 103.6 83 66.3
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.1e-20 102.8 178 39.9
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 4.1e-20 102.4 202 40.6
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.3e-20 102.1 202 38.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 1.2e-19 100.9 155 40.6
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.2e-19 100.9 198 37.4
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.0e-19 100.1 196 40.3
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.6e-19 99.8 183 37.7
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.5e-19 99.0 209 35.9
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 1.0e-18 97.8 128 49.2
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 1.0e-18 97.8 140 45.0
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.7e-18 97.1 198 35.9
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 2.9e-18 96.3 128 48.4
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 2.9e-18 96.3 128 48.4
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 5.0e-18 95.5 194 37.1
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 8.5e-18 94.7 185 38.9
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 5.5e-17 92.0 197 39.6
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 7.2e-17 91.7 155 40.6
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.6e-16 90.5 147 40.8
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-16 89.7 93 51.6
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.7e-16 89.7 57 71.9
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.7e-16 89.7 57 71.9
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.6e-16 89.4 189 34.4
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 3.6e-16 89.4 198 34.8
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 4.7e-16 89.0 200 34.5
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 4.7e-16 89.0 161 37.3
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 6.1e-16 88.6 184 33.7
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 8.0e-16 88.2 200 34.5
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 8.0e-16 88.2 211 35.5
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 8.0e-16 88.2 200 34.5
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.4e-15 87.4 197 33.0
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.4e-15 87.4 145 40.0
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.3e-15 86.7 94 48.9
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 5.2e-15 85.5 121 45.5
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 5.2e-15 85.5 194 33.0
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 5.2e-15 85.5 194 32.5
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 5.2e-15 85.5 85 54.1
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 8.8e-15 84.7 92 55.4
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-14 84.3 196 33.7
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.2e-14 84.3 196 33.7
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 2.6e-14 83.2 200 35.0
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 5.7e-14 82.0 97 46.4
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.7e-13 80.5 119 44.5
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 2.8e-13 79.7 155 37.4
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 3.7e-13 79.3 101 47.5
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 3.7e-13 79.3 101 47.5
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 4.8e-13 79.0 195 33.3
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.8e-13 79.0 212 34.4
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-12 77.0 181 33.7
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 5.3e-12 75.5 185 32.4
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 7.0e-12 75.1 173 34.7
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 1.7e-10 70.5 204 31.4
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 5.0e-10 68.9 147 33.3
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 5.0e-10 68.9 151 31.1
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 5.0e-10 68.9 151 31.1
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.5e-10 68.6 151 30.5
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 6.5e-10 68.6 103 39.8
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 6.5e-10 68.6 103 39.8
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 4.2e-09 65.9 151 30.5
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 1.2e-08 64.3 203 30.0
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 1.2e-08 64.3 85 38.8
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.3e-07 60.1 112 37.5
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 1.5e-06 57.4 175 31.4
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 2.0e-06 57.0 51 47.1
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 2.6e-06 56.6 69 46.4
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 9.8e-06 54.7 69 43.5


User provided reference genes

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