Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 3.5e-64 248.1 120 100.0
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 3.5e-64 248.1 120 100.0
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 2.6e-35 152.1 107 75.7
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 6.5e-26 120.9 107 62.6
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.9e-25 119.4 105 64.8
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.2e-25 118.6 105 63.8
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.4e-25 117.1 105 62.9
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 4.7e-24 114.8 103 63.1
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.7e-23 110.9 104 64.4
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.6e-22 109.0 104 63.5
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.6e-22 109.0 104 63.5
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 5.7e-22 107.8 103 59.2
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 4.8e-21 104.8 110 58.2
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.1e-20 102.1 101 62.4
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 1.7e-18 96.3 78 64.1
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.9e-18 95.5 71 67.6
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 7.2e-17 90.9 111 49.5
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.1e-16 89.4 113 49.6
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.7e-16 89.0 105 48.6
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 2.7e-16 89.0 104 51.9
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.6e-16 88.6 102 53.9
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 4.7e-16 88.2 110 50.0
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 4.7e-16 88.2 104 47.1
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 8.0e-16 87.4 107 50.5
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.4e-15 86.7 104 51.9
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 3.0e-15 85.5 103 48.5
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 3.0e-15 85.5 104 51.0
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 3.0e-15 85.5 107 50.5
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 6.8e-15 84.3 98 46.9
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 6.8e-15 84.3 114 45.6
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 1.5e-14 83.2 103 48.5
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.5e-14 83.2 102 44.1
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 2.0e-14 82.8 106 50.9
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 3.4e-14 82.0 112 48.2
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 3.4e-14 82.0 116 44.0
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 7.5e-14 80.9 104 42.3
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 9.8e-14 80.5 102 46.1
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 1.3e-13 80.1 110 43.6
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.7e-13 79.7 104 46.2
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 2.2e-13 79.3 110 46.4
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 2.2e-13 79.3 112 44.6
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.8e-13 78.2 107 47.7
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 8.3e-13 77.4 107 47.7
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 8.3e-13 77.4 107 47.7
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 8.3e-13 77.4 100 48.0
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 8.3e-13 77.4 101 46.5
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.1e-12 77.0 107 47.7
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 2.4e-12 75.9 105 45.7
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 2.4e-12 75.9 107 44.9
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 2.4e-12 75.9 112 42.9
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 3.1e-12 75.5 105 46.7
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 9.1e-12 73.9 106 43.4
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 1.2e-11 73.6 62 58.1
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-11 73.6 68 58.8
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 1.2e-11 73.6 63 60.3
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 1.6e-11 73.2 115 40.9
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.0e-11 72.8 104 42.3
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 4.5e-11 71.6 102 41.2
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 5.9e-11 71.2 107 42.1
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 7.7e-11 70.9 67 56.7
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 7.7e-11 70.9 69 58.0
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 1.0e-10 70.5 102 43.1
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.3e-10 70.1 68 57.4
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.7e-10 69.7 113 40.7
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 1.7e-10 69.7 95 45.3
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 1.7e-10 69.7 106 41.5
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.9e-10 68.9 67 53.7
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 3.8e-10 68.6 61 54.1
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 5.0e-10 68.2 95 45.3
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 5.0e-10 68.2 102 41.2
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 5.0e-10 68.2 110 41.8
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 5.0e-10 68.2 109 41.3
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 5.0e-10 68.2 67 55.2
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 8.6e-10 67.4 96 44.8
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 8.6e-10 67.4 73 49.3
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 1.1e-09 67.0 101 40.6
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 1.1e-09 67.0 77 50.6
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 1.1e-09 67.0 67 56.7
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 1.5e-09 66.6 61 52.5
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.5e-09 66.6 67 56.7
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 1.9e-09 66.2 110 40.9
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.9e-09 66.2 67 52.2
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.5e-09 65.9 110 42.7
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.3e-09 65.5 110 43.6
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 3.3e-09 65.5 98 42.9
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 4.2e-09 65.1 95 42.1
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.2e-09 65.1 68 51.5
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 4.2e-09 65.1 62 54.8
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 4.2e-09 65.1 117 36.8
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 4.2e-09 65.1 61 55.7
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 4.2e-09 65.1 67 52.2
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.5e-09 64.7 65 52.3
AL4G17390 Arabidopsis lyrata HOM05D012534 ORTHO05D003275 5.5e-09 64.7 99 45.5
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 5.5e-09 64.7 110 43.6
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.5e-09 64.7 109 44.0
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 5.5e-09 64.7 67 53.7
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 5.5e-09 64.7 67 53.7
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 7.2e-09 64.3 70 51.4
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 7.2e-09 64.3 76 47.4
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 7.2e-09 64.3 104 43.3
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 7.2e-09 64.3 65 53.8
A03p17690 Brassica napus HOM05D012534 ORTHO05D003275 9.5e-09 63.9 112 39.3
BraA03t11034Z Brassica rapa HOM05D012534 ORTHO05D003275 9.5e-09 63.9 112 39.3
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 9.5e-09 63.9 112 42.9
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 9.5e-09 63.9 109 42.2
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.5e-09 63.9 70 52.9
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 9.5e-09 63.9 70 52.9
Lsat_1_v5_gn_6_11260 Lactuca sativa HOM05D003277 ORTHO05D003275 9.5e-09 63.9 100 41.0
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.2e-08 63.5 66 50.0
AT2G25735 Arabidopsis thaliana HOM05D012534 ORTHO05D003275 1.6e-08 63.2 99 45.5
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 1.6e-08 63.2 70 50.0
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.6e-08 63.2 70 52.9
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 2.1e-08 62.8 112 41.1
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.1e-08 62.8 62 53.2
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 2.1e-08 62.8 106 42.5
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 2.1e-08 62.8 72 54.2
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.8e-08 62.4 66 48.5
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.8e-08 62.4 114 40.4
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.8e-08 62.4 67 52.2
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.6e-08 62.0 100 43.0
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.6e-08 62.0 70 47.1
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 3.6e-08 62.0 72 55.6
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 3.6e-08 62.0 104 41.3
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 3.6e-08 62.0 108 41.7
Aa31LG5G9940 Aethionema arabicum HOM05D012534 ORTHO05D003275 4.7e-08 61.6 109 42.2
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.7e-08 61.6 66 48.5
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 4.7e-08 61.6 67 52.2
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 6.1e-08 61.2 100 40.0
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.1e-08 61.2 55 56.4
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 6.1e-08 61.2 100 41.0
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 6.1e-08 61.2 65 52.3
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 8.0e-08 60.8 107 39.3
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 8.0e-08 60.8 67 47.8
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 1.0e-07 60.5 97 43.3
BolC3t14445H Brassica oleracea HOM05D012534 ORTHO05D003275 1.0e-07 60.5 113 38.9
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 1.0e-07 60.5 86 45.3
SGA_v2.0_scaffold27G11531 Striga asiatica HOM05D003277 ORTHO05D003275 1.0e-07 60.5 102 41.2
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 1.0e-07 60.5 63 50.8
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.4e-07 60.1 85 45.9
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.4e-07 60.1 107 37.4
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 1.4e-07 60.1 102 43.1
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 1.4e-07 60.1 72 51.4
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 1.4e-07 60.1 61 54.1
BcaB01g04038 Brassica carinata HOM05D012534 ORTHO05D003275 1.8e-07 59.7 113 38.9
C03p20780 Brassica napus HOM05D012534 ORTHO05D003275 1.8e-07 59.7 113 38.9
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.8e-07 59.7 114 39.5
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.8e-07 59.7 111 36.0
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 2.3e-07 59.3 66 45.5
Thhalv10000375m.g Eutrema salsugineum HOM05D012534 ORTHO05D003275 3.0e-07 58.9 115 39.1
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.0e-07 58.5 109 37.6
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 5.2e-07 58.2 61 47.5
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 5.2e-07 58.2 87 40.2
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 5.2e-07 58.2 111 36.9
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 5.2e-07 58.2 40 72.5
Carub.0004s0551 Capsella rubella HOM05D012534 ORTHO05D003275 6.8e-07 57.8 116 37.9
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 6.8e-07 57.8 62 46.8
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 6.8e-07 57.8 62 46.8
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 1.2e-06 57.0 72 48.6
Sc21g0005130 Simmondsia chinensis HOM05D003277 ORTHO05D003275 1.2e-06 57.0 107 38.3
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.5e-06 56.6 113 38.1
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 2.0e-06 56.2 133 33.1
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.0e-06 56.2 109 36.7
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 2.6e-06 55.8 60 55.0
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.6e-06 55.8 70 44.3
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 2.6e-06 55.8 61 57.4
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 3.4e-06 55.5 65 53.8
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 3.4e-06 55.5 115 36.5
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 3.4e-06 55.5 128 36.7
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.4e-06 55.5 105 39.0
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 3.4e-06 55.5 65 47.7
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 3.4e-06 55.5 113 41.6
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 4.4e-06 55.1 61 45.9
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 4.4e-06 55.1 62 48.4
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 4.4e-06 55.1 106 37.7
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 4.4e-06 55.1 96 44.8
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 5.7e-06 54.7 61 55.7
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 5.7e-06 54.7 64 50.0
HPP92_008689 Vanilla planifolia HOM05D003277 ORTHO05D003275 5.7e-06 54.7 68 44.1
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 7.5e-06 54.3 64 46.9
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 7.5e-06 54.3 112 37.5
PGSC0003DMG400000319 Solanum tuberosum HOM05D003277 ORTHO05D003275 7.5e-06 54.3 110 35.5
TPR.G39760 Trifolium pratense HOM05D003277 ORTHO05D003275 7.5e-06 54.3 73 50.7
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 7.5e-06 54.3 65 49.2
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 9.8e-06 53.9 62 46.8
HPP92_008676 Vanilla planifolia HOM05D003277 ORTHO05D003275 9.8e-06 53.9 62 48.4


User provided reference genes

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