Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 4141.7 2120 100.0
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3364.7 2085 83.0
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3299.2 2135 80.4
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3264.6 2086 81.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3231.0 2086 79.3
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3219.1 2086 80.3
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3217.2 2087 79.8
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3215.2 2097 79.5
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3211.0 2086 79.6
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3199.1 2095 79.3
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3197.5 2085 79.8
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3181.0 2085 78.9
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3169.0 2089 78.8
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3165.2 2093 78.5
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3158.6 2086 78.3
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3154.0 2106 78.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3135.5 2090 77.8
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3131.3 2128 76.0
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3126.3 2087 78.0
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3122.0 2111 77.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3102.0 2087 76.4
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3079.7 2087 75.9
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3068.9 2086 75.7
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3055.0 2090 75.0
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3040.4 2086 75.2
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3033.8 2086 75.3
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3030.4 2086 75.4
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3025.7 2114 74.8
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3013.4 2091 74.8
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3010.3 2086 75.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3007.2 2086 74.3
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 2993.4 2086 74.2
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 2991.1 2086 74.1
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 2952.5 2090 74.0
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2943.3 2104 72.8
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 2942.9 2090 73.7
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 2914.8 2089 72.1
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 2903.2 2405 65.6
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 2896.7 2088 72.4
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 2888.6 2089 72.5
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 2878.6 2087 71.2
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 2867.8 2086 72.3
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 2833.9 2087 71.5
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2832.4 2088 70.9
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 2832.0 2093 70.5
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 2824.3 2089 70.5
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2818.9 2089 70.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 2778.8 2086 70.5
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2763.0 2095 68.6
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 2745.3 2086 69.2
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 2735.3 2086 68.9
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 2730.3 2089 68.2
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 2721.8 2088 68.3
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 2719.5 2094 70.1
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2717.6 2104 68.5
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2715.6 1762 79.6
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2710.6 2087 68.5
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2709.1 2089 68.9
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2704.1 2086 68.4
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2701.8 2086 68.4
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2697.2 2086 68.2
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2684.1 2118 67.4
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2683.3 2118 67.5
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 2668.6 2092 68.4
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2624.0 2089 66.8
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2600.5 2090 66.1
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2595.5 1825 73.5
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2593.1 1728 77.5
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2574.3 2090 65.7
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2533.4 2109 65.1
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2504.9 2187 63.4
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2407.5 1588 78.2
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2375.9 1495 81.8
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2253.0 2011 59.6
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2243.8 1785 67.6
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2201.8 1533 75.6
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2058.1 1438 75.0
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 1952.9 1502 68.9
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1824.3 1545 63.3
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 1815.0 2138 49.3
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1792.3 2121 48.9
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1774.6 1194 76.6
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1741.9 1180 77.1
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1706.8 1423 65.3
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1513.0 933 83.9
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1439.1 2087 42.4
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1416.4 1186 63.8
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1409.8 995 74.0
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1407.1 987 74.6
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1404.8 1056 71.7
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1348.2 1177 63.1
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1310.0 2222 39.3
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1300.4 1230 58.1
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1260.0 1187 58.0
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1216.4 2146 37.9
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1154.4 703 82.8
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1088.6 1182 52.4
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 1.8e-296 1023.8 609 87.0
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 1.0e-286 991.5 753 66.5
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 4.2e-285 986.1 594 84.3
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 1.5e-271 941.0 1052 53.0
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 3.3e-258 896.7 640 74.4
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 2.5e-237 827.4 828 56.0
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.4e-232 811.6 543 77.0
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.1e-213 748.8 705 59.6
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.0e-203 712.6 842 52.4
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 3.5e-199 700.7 499 72.7
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 3.5e-191 674.1 492 71.5
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 4.3e-181 640.6 595 59.5
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 4.8e-180 637.1 598 58.0
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 3.9e-174 617.5 613 59.7
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 5.1e-166 590.5 492 62.2
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 7.0e-155 553.5 498 61.6
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.5e-152 545.8 543 53.8
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.2e-150 537.3 552 55.3
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.2e-141 509.6 356 75.0
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.0e-118 433.3 357 62.5
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.2e-118 431.0 357 62.2
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.6e-114 419.5 358 60.3
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.5e-114 418.3 493 47.3
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.1e-110 405.2 239 87.9
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 6.4e-108 397.5 377 57.8
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.7e-92 346.3 348 54.6
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 4.9e-92 344.7 204 86.8
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.0e-89 335.5 235 70.6
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 3.6e-87 328.6 219 75.3
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 6.2e-87 327.8 214 77.1
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.7e-84 319.7 231 69.7
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 6.0e-66 258.1 287 53.7
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.5e-53 216.9 338 41.1
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 3.8e-52 212.2 255 47.1
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 8.8e-49 201.1 1386 24.2
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 5.9e-37 161.8 105 76.2
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 6.5e-36 158.3 116 75.0
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 8.8e-33 147.9 114 63.2
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.6e-32 146.4 143 53.8
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 8.2e-31 141.4 138 49.3
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 9.1e-30 137.9 87 78.2
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 9.4e-27 127.9 120 52.5
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.2e-26 127.5 101 71.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.2e-26 127.5 101 71.3
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 2.0e-24 120.2 117 59.0
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 9.8e-24 117.9 140 51.4
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.2e-18 100.9 79 69.6
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 2.1e-18 100.1 182 39.0
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.0e-17 97.8 132 52.3
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 7.5e-16 91.7 86 53.5
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 2.2e-15 90.1 75 66.7
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.8e-15 89.7 123 52.8
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 2.8e-15 89.7 88 53.4
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 6.3e-15 88.6 204 35.3
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.1e-14 87.8 67 65.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.1e-14 87.8 67 65.7
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 7.0e-14 85.1 51 84.3
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 9.2e-14 84.7 73 65.8
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 3.5e-13 82.8 104 47.1
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.5e-11 76.6 48 79.2
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.2e-10 74.3 53 67.9
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.1e-10 73.6 79 62.0
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 7.5e-08 65.1 138 35.5
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 2.9e-07 63.2 82 45.1
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 4.9e-07 62.4 101 45.5
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.1e-06 61.2 93 44.1


User provided reference genes

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