Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.1e-113 413.3 216 100.0
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 2.1e-107 392.5 216 93.5
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.1e-105 386.7 216 92.1
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.3e-105 385.2 216 90.7
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 91.2
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 90.3
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 90.3
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 90.3
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 90.7
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 89.8
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 90.3
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.3
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.3
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 90.3
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 90.3
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.4
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.4
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 89.4
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.9
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.9
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 89.8
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 88.4
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 88.4
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 89.8
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 1.6e-102 376.3 215 89.8
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 90.3
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.8
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 88.4
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 88.4
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.9
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 89.4
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 89.4
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.4
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.0
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.0
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 87.0
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 87.5
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.4
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 87.5
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 87.5
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 89.4
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 87.0
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 87.0
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 87.5
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 8.5e-101 370.5 214 87.9
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 87.5
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 86.6
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.4
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.9
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 87.0
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 88.4
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 3.2e-100 368.6 215 87.0
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 88.0
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 88.0
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 85.2
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.2e-99 366.7 215 86.5
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 86.6
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 85.6
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.1e-99 365.9 215 87.9
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 85.6
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 84.3
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 84.3
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 88.0
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 84.7
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 85.6
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 84.3
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 84.3
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 84.3
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 84.3
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 83.8
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 83.8
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 85.6
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 8.0e-99 364.0 216 83.8
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 8.0e-99 364.0 216 87.5
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 84.3
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 85.2
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 87.5
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 87.0
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 85.2
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 86.1
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 87.0
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.3e-98 362.5 220 85.5
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 86.6
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 2.3e-98 362.5 227 85.0
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 87.0
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 85.6
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 82.9
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 82.9
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 82.9
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 82.9
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 82.9
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 83.3
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 86.6
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 85.2
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 8.8e-98 360.5 216 83.3
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.5e-97 359.8 216 85.2
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 2.2e-96 355.9 221 83.3
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 6.3e-96 354.4 216 83.3
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 4.1e-95 351.7 216 83.3
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 4.5e-94 348.2 217 83.9
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 5.9e-94 347.8 216 79.2
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 5.9e-94 347.8 199 91.0
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 2.2e-93 345.9 221 80.5
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 2.9e-93 345.5 216 80.1
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 3.8e-93 345.1 216 81.9
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 4.4e-89 331.6 216 80.6
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 2.8e-88 328.9 216 80.1
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 3.7e-88 328.6 221 78.3
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 8.3e-88 327.4 216 79.2
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 1.1e-87 327.0 218 77.1
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 79.2
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 79.2
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 5.4e-87 324.7 216 74.5
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 79.2
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 2.7e-86 322.4 216 75.9
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 5.9e-86 321.2 216 75.9
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 5.9e-86 321.2 216 75.9
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 7.7e-86 320.9 216 75.5
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 2.5e-84 315.8 216 76.4
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 6.1e-83 311.2 181 87.3
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 4.0e-82 308.5 215 76.7
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 2.0e-81 306.2 216 75.0
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 2.6e-81 305.8 165 90.9
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 2.4e-79 299.3 165 90.9
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.1e-79 298.9 165 89.7
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 2.7e-78 295.8 216 73.6
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 7.7e-78 294.3 276 61.2
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.9e-76 289.7 217 70.0
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.2e-75 287.0 216 72.2
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.7e-75 285.0 216 71.8
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 2.3e-74 282.7 216 69.4
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.0e-74 282.3 216 70.8
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 3.0e-74 282.3 217 70.0
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 2.0e-73 279.6 216 70.8
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 9.2e-71 270.8 216 69.9
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 2.0e-70 269.6 353 49.3
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.3e-69 266.9 203 72.9
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 2.5e-68 262.7 165 82.4
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 1.4e-66 256.9 217 68.2
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.5e-65 253.4 180 77.2
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 3.4e-65 252.3 144 81.2
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 1.4e-58 230.3 217 56.7
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 2.1e-54 216.5 233 52.4
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.6e-49 199.5 273 50.2
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 9.9e-49 197.6 136 81.6
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 3.8e-48 195.7 108 83.3
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 3.8e-48 195.7 108 83.3
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 6.4e-48 194.9 219 49.3
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 4.7e-43 178.7 201 48.8
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 9.9e-41 171.0 135 69.6
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 4.2e-39 165.6 117 69.2
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.5e-38 162.5 84 86.9
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 7.8e-38 161.4 114 77.2
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 5.1e-37 158.7 81 90.1
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.5e-36 156.4 106 73.6
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 80.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 80.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 80.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 80.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 80.2
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 3.4e-33 146.0 81 84.0
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.1e-26 124.4 71 76.1
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.1e-20 104.4 74 81.1
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.8e-19 99.8 63 85.7
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.1e-18 96.3 68 80.9
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 1.4e-10 70.9 39 79.5
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 5.3e-10 68.9 39 76.9
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 1.5e-09 67.4 48 68.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 1.5e-09 67.4 48 68.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 1.5e-09 67.4 48 68.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 5.9e-09 65.5 48 66.7


User provided reference genes

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