Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.9e-243 844.7 413 100.0
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 2.6e-191 672.2 403 80.4
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.8e-168 596.3 388 74.2
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.2e-164 583.6 416 70.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 2.1e-164 582.8 357 79.8
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 8.8e-163 577.4 413 70.2
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.1e-162 577.0 385 73.2
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 4.3e-162 575.1 394 72.6
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 5.7e-162 574.7 402 71.1
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.8e-161 572.4 399 71.4
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 3.7e-161 572.0 399 71.4
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.7e-161 572.0 415 68.0
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 3.1e-160 568.9 410 70.0
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 9.1e-160 567.4 410 69.8
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 9.1e-160 567.4 358 76.5
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 3.4e-159 565.5 374 72.7
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 4.5e-159 565.1 401 70.3
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.9e-159 564.7 409 69.2
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 5.9e-159 564.7 409 69.2
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 1.3e-158 563.5 423 66.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.9e-158 562.4 358 74.6
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 1.9e-157 559.7 351 76.9
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.5e-157 559.3 351 75.8
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.2e-156 557.0 351 75.5
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.8e-155 553.1 381 71.9
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 2.3e-155 552.7 414 65.9
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 6.7e-155 551.2 364 73.9
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.5e-154 550.1 351 75.2
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 2.0e-154 549.7 353 75.1
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 3.3e-154 548.9 407 68.3
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 3.3e-154 548.9 351 73.5
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.4e-154 548.5 351 74.9
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 5.7e-154 548.1 352 77.0
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 5.7e-154 548.1 349 75.9
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.3e-153 547.0 382 70.9
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.7e-153 546.6 363 73.8
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.8e-153 545.8 400 67.2
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 2.8e-153 545.8 347 74.6
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 8.2e-153 544.3 352 74.4
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.4e-152 542.7 347 75.5
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.1e-152 542.3 350 74.6
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 5.3e-152 541.6 418 64.6
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.2e-151 540.4 352 73.9
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.2e-151 540.4 351 74.4
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.6e-151 540.0 359 73.8
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.6e-151 539.3 347 74.6
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.6e-151 539.3 350 74.3
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 2.6e-151 539.3 351 74.6
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.5e-151 538.5 351 74.9
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.9e-150 535.8 391 67.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 6.5e-150 534.6 348 73.3
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 8.5e-150 534.3 348 73.6
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 1.2e-148 530.4 361 69.3
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-147 526.9 409 66.3
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 4.0e-147 525.4 404 65.3
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 4.0e-147 525.4 405 63.0
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 6.7e-147 524.6 355 71.5
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.1e-146 523.9 376 69.7
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 5.7e-146 521.5 335 73.7
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 7.5e-146 521.2 423 60.3
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.2e-145 519.6 413 63.9
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 2.8e-145 519.2 357 70.0
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 6.3e-145 518.1 339 73.5
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 6.3e-145 518.1 380 66.1
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.4e-144 516.9 405 62.2
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.8e-144 516.5 360 70.3
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 4.1e-144 515.4 357 69.2
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 5.3e-144 515.0 357 69.7
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 5.3e-144 515.0 359 68.5
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 7.0e-144 514.6 353 70.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.0e-143 513.1 307 79.5
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.7e-143 512.7 358 69.3
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.9e-143 511.5 360 70.8
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 7.7e-143 511.1 360 70.0
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.3e-142 510.4 351 70.9
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.9e-142 509.2 303 78.5
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 2.9e-142 509.2 439 60.4
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.9e-142 509.2 407 61.2
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 6.5e-142 508.1 384 66.9
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 4.2e-141 505.4 357 67.2
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 5.5e-141 505.0 358 69.3
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.1e-140 503.1 356 66.9
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.1e-140 503.1 412 61.7
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.7e-140 501.9 334 72.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 8.0e-140 501.1 350 68.6
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 8.0e-140 501.1 371 66.3
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 4.0e-139 498.8 358 67.0
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 6.8e-139 498.0 363 64.5
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.2e-138 497.3 358 68.2
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 2.0e-138 496.5 347 70.0
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 4.4e-138 495.4 358 65.6
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 5.7e-138 495.0 303 76.6
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 7.5e-138 494.6 363 64.2
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 9.8e-138 494.2 357 66.9
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.8e-137 492.7 363 65.8
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.8e-137 492.7 350 67.4
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.1e-136 490.7 357 66.1
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.8e-136 490.0 359 65.5
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 4.1e-136 488.8 280 81.8
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.7e-134 483.4 405 60.5
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.7e-132 476.1 303 73.9
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.7e-132 476.1 304 73.0
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.0e-131 474.2 313 73.2
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.8e-131 473.4 360 65.8
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 1.2e-130 470.7 317 73.2
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 9.8e-130 467.6 331 66.8
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.8e-129 466.1 334 66.8
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 6.3e-129 464.9 323 68.1
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.0e-127 459.9 337 68.5
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 2.0e-127 459.9 323 67.8
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.5e-127 459.1 263 81.0
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.5e-127 458.8 356 63.8
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 2.9e-121 439.5 329 66.9
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.8e-120 436.8 352 61.6
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.0e-115 421.0 323 62.8
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-110 403.7 478 46.2
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 2.5e-109 399.8 246 75.6
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 2.8e-108 396.4 250 71.6
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.8e-107 393.7 288 69.1
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 8.3e-105 384.8 383 51.7
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.1e-104 382.5 218 82.6
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.5e-103 379.4 394 49.2
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 6.0e-103 378.6 271 69.0
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.3e-102 377.5 349 54.7
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 5.1e-102 375.6 258 69.8
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 6.6e-102 375.2 280 65.7
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.6e-102 375.2 380 52.9
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.8e-100 369.8 417 48.4
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 4.0e-99 365.9 278 68.3
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 5.2e-99 365.5 325 58.5
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.7e-97 360.5 296 60.1
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 4.1e-96 355.9 377 52.8
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.9e-93 347.1 293 61.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 2.1e-92 343.6 245 69.8
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 4.7e-92 342.4 363 49.6
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.4e-91 340.1 210 73.8
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 7.6e-90 335.1 360 48.3
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 5.8e-82 308.9 285 56.5
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 3.8e-81 306.2 192 71.4
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.1e-79 300.4 194 74.7
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 4.6e-79 299.3 220 68.2
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.5e-77 293.5 195 72.8
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.1e-76 290.4 302 53.6
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 4.8e-76 289.3 279 49.5
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.2e-72 276.6 194 70.1
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 5.5e-72 275.8 331 48.9
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.8e-68 262.7 195 68.2
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 6.7e-62 242.3 134 83.6
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 2.6e-50 203.8 160 63.8
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 3.9e-46 189.9 126 69.0
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.5e-45 188.0 358 33.2
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 3.7e-44 183.3 255 44.7
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.7e-44 183.3 340 39.1
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 9.1e-43 178.7 235 47.2
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.0e-41 175.3 117 75.2
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 7.9e-39 165.6 213 39.0
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.7e-37 159.5 296 31.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 5.3e-35 152.9 89 75.3
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 2.6e-34 150.6 156 48.1
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.2e-25 120.9 219 32.4
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 5.9e-18 96.3 111 52.3
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.5e-16 91.7 79 59.5
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 4.7e-15 86.7 77 55.8
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.0e-14 85.5 77 55.8
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.4e-14 85.1 65 61.5
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 4.0e-14 83.6 49 81.6
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.8e-11 74.7 67 53.7
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.0e-09 66.6 40 75.0
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.6e-07 61.6 78 50.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.3e-06 57.8 55 50.9


User provided reference genes

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