Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1945.2 986 100.0
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1593.9 985 80.6
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1589.7 986 79.6
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1574.7 986 78.3
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1573.1 979 79.3
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1572.8 986 78.9
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1571.2 981 79.0
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1570.4 993 78.5
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1563.5 988 77.9
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1561.2 986 79.1
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1560.4 985 78.3
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1558.5 984 78.0
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1557.3 981 78.4
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1555.4 985 78.4
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1550.8 984 77.2
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1548.5 986 77.2
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1546.9 986 77.5
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1545.8 986 77.3
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1545.0 986 76.8
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1543.9 954 78.7
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1543.9 986 76.5
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1538.1 986 76.9
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1538.1 1009 76.7
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1537.7 985 77.5
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1531.5 986 76.8
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1528.5 985 76.8
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1521.1 987 76.2
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1520.4 984 76.5
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1519.6 986 76.4
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1518.8 985 76.0
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1518.1 984 76.4
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1515.0 984 75.8
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1510.7 987 75.9
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1510.7 986 75.5
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1508.0 987 75.5
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1508.0 984 74.9
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1507.7 987 75.6
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1502.3 984 75.9
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1501.1 986 74.3
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1493.0 984 74.1
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1492.6 986 74.2
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1477.2 984 72.6
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1475.7 987 73.4
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1475.7 986 73.7
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1473.0 984 73.3
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1470.7 984 73.1
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1469.9 1006 73.9
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1469.9 987 72.9
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1462.6 986 72.8
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1460.3 984 72.5
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1459.9 989 72.7
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1459.1 986 72.2
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1459.1 984 72.4
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1459.1 986 72.8
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1454.9 984 72.6
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1451.0 986 72.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1448.7 986 71.0
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1448.7 984 70.8
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1448.0 975 73.2
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1447.2 975 72.4
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1439.1 984 72.0
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1436.8 986 72.0
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1434.5 900 79.4
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1434.5 985 71.2
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1432.2 973 71.0
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1430.6 986 72.0
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1430.2 986 69.9
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1429.5 984 70.6
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1426.8 986 71.1
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1426.4 984 71.2
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1424.5 984 70.9
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1424.5 987 71.3
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1424.1 984 71.2
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1423.7 986 71.5
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1423.7 987 71.2
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1423.3 984 71.0
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1423.3 984 70.5
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1422.9 987 71.5
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1422.5 984 71.3
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1421.8 987 71.5
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1421.4 985 70.7
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1420.2 983 70.2
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1417.5 986 71.5
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1416.0 986 69.5
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1416.0 986 69.3
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1415.6 999 70.3
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1415.6 986 71.3
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1413.3 1083 66.6
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1412.9 990 70.4
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1411.7 1006 70.1
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1411.7 986 71.5
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1411.0 984 68.6
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1406.7 987 68.3
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1406.7 984 68.8
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1404.0 982 69.6
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1399.8 987 69.3
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1399.0 1013 69.3
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1397.9 981 69.4
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1396.3 981 69.2
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1393.3 988 68.7
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1390.2 955 71.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1386.3 1081 64.3
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1381.7 985 69.2
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 989 69.5
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 953 69.4
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1357.0 1016 67.0
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1356.3 986 67.3
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1354.3 986 67.1
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1349.7 1001 67.6
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1347.0 980 67.0
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1309.7 984 65.8
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1307.0 986 65.2
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1302.7 968 67.3
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1300.4 984 67.1
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1296.2 986 66.3
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1288.9 897 70.2
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1256.1 1015 63.3
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1254.6 982 63.0
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1242.3 847 71.8
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1229.2 975 61.7
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1218.4 975 61.7
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1198.3 882 68.0
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1172.1 848 66.6
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 0.0e+00 1141.7 810 69.1
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1137.9 953 60.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.2e-297 1025.8 976 54.3
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.5e-293 1012.3 659 75.1
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 2.5e-288 995.7 977 51.9
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.0e-266 922.9 541 83.2
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 3.6e-255 885.6 955 49.4
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 8.0e-255 884.4 690 62.5
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.3e-244 850.5 658 64.3
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 1.5e-213 747.3 880 44.2
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.9e-212 743.0 530 69.8
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 7.1e-195 685.3 809 48.6
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.2e-175 620.5 362 82.6
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 7.2e-163 578.9 916 39.6
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.8e-159 567.0 420 66.4
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.6e-144 517.3 296 86.8
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 5.9e-141 506.1 296 83.8
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.1e-134 485.3 282 84.8
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-130 471.5 844 35.4
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.0e-117 427.9 337 62.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.7e-117 427.6 256 83.2
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 8.9e-113 412.5 664 42.6
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 4.1e-110 403.7 1034 29.0
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 7.1e-102 376.3 1002 30.8
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 3.6e-90 337.4 380 45.8
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 9.0e-89 332.8 319 53.3
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.0e-84 317.8 257 60.3
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 7.6e-80 303.1 362 46.7
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 3.2e-78 297.7 428 41.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.8e-66 257.3 276 51.4
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 6.3e-58 230.3 147 81.6
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 8.5e-55 219.9 184 58.2
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.6e-53 215.7 140 75.7
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 2.7e-53 214.9 129 81.4
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 3.0e-52 211.5 125 83.2
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 3.8e-47 194.5 125 79.2
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 9.7e-43 179.9 105 81.9
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.6e-40 172.6 107 75.7
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 3.5e-40 171.4 107 75.7
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 3.5e-40 171.4 107 75.7
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 5.9e-40 170.6 203 53.2
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 9.4e-38 163.3 1022 21.6
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.5e-30 139.4 85 81.2
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 3.0e-28 131.7 82 74.4
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 1.2e-21 109.8 182 37.9
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 2.1e-21 109.0 121 56.2
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 2.1e-21 109.0 121 56.2
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 3.6e-21 108.2 63 82.5
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 4.7e-21 107.8 191 38.2
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 1.8e-20 105.9 71 73.2
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 3.4e-19 101.7 62 77.4
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 6.3e-18 97.4 82 57.3
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 1.7e-15 89.4 72 63.9
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.7e-15 89.4 140 41.4
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 2.9e-15 88.6 60 71.7
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 3.8e-15 88.2 53 73.6
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 3.3e-14 85.1 47 76.6
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.8e-13 82.0 60 66.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 6.1e-13 80.9 60 66.7
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 1.1e-06 60.1 122 31.1
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 2.5e-06 58.9 37 75.7
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 9.5e-06 57.0 115 30.4


User provided reference genes

Program Settings