Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 2.1e-163 578.9 293 100.0
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 3.0e-133 478.8 296 79.7
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.1e-130 470.3 296 78.7
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 6.9e-130 467.6 293 79.2
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 1.5e-129 466.5 292 79.1
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 2.6e-129 465.7 296 77.7
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 3.2e-127 458.8 296 77.0
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 5.5e-127 458.0 296 77.7
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 7.2e-127 457.6 293 78.5
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 9.4e-127 457.2 295 76.3
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 6.1e-126 454.5 294 77.2
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.1e-124 450.3 296 75.0
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 1.5e-124 449.9 296 75.0
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 5.7e-124 448.0 294 76.5
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 3.7e-123 445.3 296 74.3
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 1.8e-122 443.0 290 73.4
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.8e-122 443.0 279 77.1
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 4.1e-122 441.8 296 74.0
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 5.3e-122 441.4 294 73.8
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 5.3e-122 441.4 294 73.8
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 5.9e-121 438.0 292 74.0
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 7.7e-121 437.6 294 74.1
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.0e-120 437.2 276 77.2
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 1.0e-120 437.2 295 73.2
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 1.0e-120 437.2 290 74.1
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 1.3e-120 436.8 291 75.3
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 1.3e-120 436.8 318 70.8
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 2.2e-120 436.0 293 75.1
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 3.8e-120 435.3 275 77.1
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 6.5e-120 434.5 292 74.7
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 8.5e-120 434.1 295 74.2
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 1.1e-119 433.7 294 74.8
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 1.4e-119 433.3 291 74.9
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 1.4e-119 433.3 294 74.8
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 1.4e-119 433.3 293 74.7
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 1.9e-119 433.0 275 75.6
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 1.9e-119 433.0 305 71.1
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 2.5e-119 432.6 293 74.1
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 4.2e-119 431.8 287 73.5
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 5.5e-119 431.4 304 71.4
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 5.5e-119 431.4 286 74.5
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 7.2e-119 431.0 292 72.3
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 1.6e-118 429.9 290 72.4
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 6.1e-118 427.9 274 77.4
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 8.0e-118 427.6 295 73.9
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 8.0e-118 427.6 298 72.8
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 1.0e-117 427.2 291 73.2
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 1.4e-117 426.8 305 70.5
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 2.3e-117 426.0 292 70.2
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 2.3e-117 426.0 302 70.5
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 3.9e-117 425.2 292 71.9
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 5.2e-117 424.9 294 72.1
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 5.2e-117 424.9 292 74.0
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 6.7e-117 424.5 300 71.3
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 6.7e-117 424.5 290 71.7
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 8.8e-117 424.1 291 73.2
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 1.1e-116 423.7 305 69.5
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 1.5e-116 423.3 294 71.8
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 1.5e-116 423.3 293 72.7
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 1.5e-116 423.3 293 72.7
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 4.4e-116 421.8 305 70.2
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 5.7e-116 421.4 293 72.0
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 9.7e-116 420.6 293 72.0
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 1.7e-115 419.9 292 72.9
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 2.2e-115 419.5 297 72.1
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 3.7e-115 418.7 280 74.6
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 4.8e-115 418.3 302 69.9
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 2.4e-114 416.0 295 68.8
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 2.4e-114 416.0 291 71.8
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 4.1e-114 415.2 277 75.5
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 7.0e-114 414.5 295 69.8
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 7.0e-114 414.5 295 70.8
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 1.6e-113 413.3 372 59.1
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 2.0e-113 412.9 288 70.8
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 2.6e-113 412.5 309 67.0
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 2.6e-113 412.5 302 68.2
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 4.5e-113 411.8 296 70.6
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 1.3e-112 410.2 294 69.0
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 1.7e-112 409.8 280 71.1
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.9e-112 409.1 290 69.3
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 2.9e-112 409.1 277 75.1
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 2.9e-112 409.1 280 75.7
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 1.1e-111 407.1 301 69.1
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 2.5e-111 406.0 312 67.0
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 4.2e-111 405.2 287 71.1
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 7.2e-111 404.4 281 70.1
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 1.2e-110 403.7 293 70.6
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 6.1e-110 401.4 300 67.3
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 1.8e-109 399.8 293 68.6
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 5.2e-109 398.3 447 50.8
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 6.7e-109 397.9 287 67.9
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 1.3e-107 393.7 281 71.5
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 2.7e-105 386.0 271 72.7
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 3.5e-105 385.6 294 68.4
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 1.4e-101 373.6 274 68.2
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 1.2e-100 370.5 299 64.9
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.5e-100 370.2 253 73.9
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 7.0e-98 361.3 286 66.8
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 8.6e-96 354.4 244 72.1
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 1.5e-95 353.6 294 63.3
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 5.5e-95 351.7 283 66.1
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.2e-94 350.5 276 64.5
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.8e-93 346.7 204 81.9
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.8e-93 346.7 276 64.1
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 9.8e-92 340.9 290 62.8
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 1.1e-87 327.4 260 65.8
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 4.4e-84 315.5 211 72.0
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 1.7e-83 313.5 275 60.4
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 3.7e-83 312.4 209 73.2
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 4.9e-83 312.0 284 57.0
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 6.6e-80 301.6 258 61.6
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 2.8e-78 296.2 286 54.2
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.2e-76 290.8 293 53.6
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.9e-75 286.2 293 53.2
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 4.6e-73 278.9 272 52.6
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 2.0e-68 263.5 295 48.5
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 4.9e-67 258.8 252 58.7
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 1.4e-66 257.3 271 51.7
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 2.4e-66 256.5 276 49.3
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 1.6e-65 253.8 165 74.5
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 3.9e-64 249.2 267 47.9
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 1.2e-62 244.2 165 70.9
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 3.1e-61 239.6 272 49.6
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 4.4e-60 235.7 165 69.1
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 2.1e-57 226.9 271 46.9
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 1.4e-53 214.2 215 56.3
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 2.4e-53 213.4 169 66.3
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 2.6e-52 209.9 264 50.4
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 4.3e-39 166.0 135 65.9
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.8e-37 160.6 117 68.4
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 1.5e-36 157.5 133 58.6
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 7.4e-23 112.1 96 61.5
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 1.1e-21 108.2 129 48.1
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 1.3e-14 84.7 242 34.7
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 5.5e-10 69.3 179 35.2
ATR0326G034 Amborella trichopoda HOM05D005681 ORTHO05D068436 6.7e-08 62.4 59 52.5


User provided reference genes

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