Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 4.6e-236 820.8 415 100.0
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 9.6e-202 706.8 417 85.9
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 9.0e-200 700.3 419 84.5
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 3.2e-197 691.8 414 84.3
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.6e-196 689.5 415 85.1
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 1.0e-195 686.8 417 82.3
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.0e-195 685.3 417 83.7
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 5.1e-195 684.5 416 83.2
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.5e-194 682.9 419 83.8
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 3.3e-194 681.8 416 83.4
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 5.7e-194 681.0 414 81.6
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 5.7e-194 681.0 417 81.3
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 2.8e-193 678.7 417 81.8
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 1.8e-192 676.0 417 82.7
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 1.8e-192 676.0 414 80.9
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 5.3e-192 674.5 418 81.6
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 5.3e-192 674.5 418 81.1
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 5.3e-192 674.5 416 82.5
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 6.9e-192 674.1 417 82.3
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.2e-191 673.3 418 80.9
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.6e-191 672.2 418 80.9
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 3.4e-191 671.8 418 80.6
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 2.2e-190 669.1 416 81.5
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 2.2e-190 669.1 418 80.6
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 3.8e-190 668.3 413 82.1
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 5.0e-190 667.9 413 79.9
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.1e-189 666.8 415 80.2
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 1.9e-189 666.0 417 80.6
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 4.6e-188 661.4 376 86.7
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 3.0e-187 658.7 425 79.5
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 3.0e-187 658.7 414 80.4
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 3.9e-187 658.3 419 78.5
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 6.7e-187 657.5 417 80.8
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 2.5e-186 655.6 416 79.6
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 2.5e-186 655.6 417 78.7
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 9.7e-186 653.7 419 78.3
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 1.3e-185 653.3 414 80.0
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 3.7e-185 651.7 373 84.2
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 9.0e-184 647.1 418 77.3
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 9.0e-184 647.1 443 74.7
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 4.5e-183 644.8 418 77.0
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 7.7e-183 644.0 413 78.0
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 2.2e-182 642.5 413 77.0
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 3.8e-182 641.7 413 77.2
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 8.5e-182 640.6 417 77.9
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 4.6e-180 634.8 416 77.4
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.4e-179 633.3 343 89.8
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.4e-179 633.3 423 76.6
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 1.8e-179 632.9 417 77.2
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 8.8e-179 630.6 421 76.0
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 2.5e-178 629.0 415 77.8
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 1.3e-177 626.7 415 77.6
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 1.4e-176 623.2 409 77.5
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 5.3e-176 621.3 365 82.7
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.2e-175 620.2 365 82.5
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 3.4e-175 618.6 362 82.9
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 3.4e-175 618.6 374 79.4
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 7.7e-175 617.5 356 85.1
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 1.1e-173 613.6 365 82.5
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 1.9e-173 612.8 406 77.1
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 7.2e-173 610.9 379 79.2
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 3.0e-171 605.5 346 86.4
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.3e-170 602.1 419 75.4
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 7.4e-170 600.9 342 83.3
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 3.7e-169 598.6 375 81.1
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 6.3e-169 597.8 359 81.9
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 6.5e-166 587.8 394 74.6
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 1.1e-165 587.0 414 73.4
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 2.5e-165 585.9 377 76.1
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 3.2e-165 585.5 392 74.2
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 3.2e-165 585.5 376 76.9
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 3.2e-165 585.5 376 76.9
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.6e-164 583.2 415 71.6
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 6.1e-164 581.3 419 70.6
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 2.3e-163 579.3 425 69.6
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 3.0e-163 578.9 431 69.1
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 5.2e-163 578.2 404 71.5
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 6.7e-163 577.8 411 71.8
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 1.3e-161 573.5 411 71.3
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 2.2e-161 572.8 415 69.6
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 4.8e-161 571.6 364 78.6
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 8.2e-161 570.9 367 75.7
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 1.4e-160 570.1 414 72.5
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 7.0e-160 567.8 357 77.0
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 9.1e-160 567.4 382 72.5
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.2e-159 567.0 391 71.6
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 2.0e-159 566.2 417 69.8
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 5.5e-157 558.1 367 77.7
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 5.5e-157 558.1 362 76.2
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 1.8e-155 553.1 335 79.7
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 3.7e-153 545.4 361 73.7
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 8.3e-153 544.3 377 71.1
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.4e-152 543.5 414 69.1
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 2.4e-152 542.7 383 69.2
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 2.0e-151 539.7 362 70.4
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 1.7e-150 536.6 399 72.2
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 6.5e-150 534.6 341 79.8
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 9.4e-149 530.8 298 85.9
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 1.6e-148 530.0 442 65.2
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 7.0e-144 514.6 350 69.7
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 9.2e-144 514.2 378 67.5
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 2.6e-138 496.1 347 69.2
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 1.1e-136 490.7 344 71.2
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 1.4e-136 490.3 270 87.4
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 3.5e-135 485.7 414 64.5
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.3e-129 467.2 351 65.2
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 7.0e-128 461.5 302 78.8
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.9e-125 453.4 253 84.6
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 4.0e-123 445.7 352 61.1
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 7.5e-122 441.4 366 59.8
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.4e-106 389.4 212 89.6
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 5.4e-96 355.5 205 82.4
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 3.1e-91 339.7 257 70.0
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 4.6e-87 325.9 210 75.2
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 2.5e-80 303.5 204 70.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 5.0e-65 252.7 278 48.9
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 8.5e-49 198.7 123 83.7
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 1.1e-48 198.4 381 34.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 4.1e-43 179.9 116 71.6
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 2.7e-42 177.2 245 43.3
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.4e-35 154.8 102 69.6
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 2.8e-31 140.6 85 72.9
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 8.3e-28 129.0 74 83.8
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 1.1e-27 128.6 164 45.7
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 2.7e-26 124.0 76 78.9
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 6.1e-23 112.8 123 52.8
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.4e-22 111.7 123 52.0
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.3e-17 94.4 74 66.2
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.1e-14 84.0 44 86.4
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 4.4e-13 80.1 100 45.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.7e-12 78.2 110 48.2
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 1.6e-10 71.6 93 47.3
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.3e-09 67.8 48 66.7
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 3.3e-08 63.9 51 62.7
PSO170G5577 Papaver somniferum HOM05D005974 ORTHO05D038942 6.8e-06 56.2 80 42.5


User provided reference genes

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