Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 3919.0 1983 100.0
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2772.3 1979 72.9
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2642.5 1989 69.0
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2611.3 1989 69.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2608.9 2004 68.2
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2593.5 2004 68.6
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2589.3 1998 67.9
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2588.5 2001 68.1
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2550.0 2017 66.9
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2543.8 2008 67.2
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2526.1 2007 67.0
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2520.7 1964 67.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2509.6 1993 66.2
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2503.4 1913 68.9
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2496.1 1991 66.3
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2471.8 1995 66.5
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2451.4 2010 65.9
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2446.4 2012 65.5
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2431.4 2075 63.2
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2420.2 1903 67.6
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2384.8 1886 66.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2375.1 2064 61.7
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2350.1 1994 61.9
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2343.5 1994 62.7
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2338.9 1920 64.4
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2335.1 2003 61.9
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2333.5 1995 62.3
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2327.7 1995 62.5
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2320.4 1996 61.6
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2311.2 1994 61.4
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2309.6 2002 62.2
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2300.8 2000 62.3
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2300.0 1998 61.4
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2293.5 1999 62.3
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2290.8 1876 65.8
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2280.0 1985 61.8
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2276.5 1994 61.0
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2260.7 1970 62.0
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2248.8 1997 60.8
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2248.4 2024 60.8
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2226.8 2019 59.7
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2224.1 2139 57.7
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2196.0 1973 59.0
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2180.2 1999 58.5
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2164.4 2049 57.5
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2152.1 1999 58.4
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2151.3 1958 60.2
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2150.2 1984 58.4
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2140.9 2047 57.3
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2135.1 1995 59.1
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2129.8 2005 57.5
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2125.5 2006 57.4
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2125.5 2053 56.6
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2110.1 1901 59.6
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2103.9 1916 59.2
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2101.6 1958 58.4
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2097.8 2013 57.2
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2093.2 1909 59.0
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2091.2 1880 60.5
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2088.5 2065 55.8
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2070.0 1960 57.7
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2069.3 1900 58.9
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2067.0 1959 57.8
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2057.0 1958 57.4
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2051.9 1951 57.9
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2051.6 1984 56.4
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2046.6 1970 57.3
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 2038.8 1986 56.4
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 2034.2 1989 57.0
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2031.9 1998 55.7
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2024.2 1999 56.5
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2014.2 1924 57.1
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2014.2 1975 56.8
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2012.3 2140 53.5
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2011.1 1897 57.1
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2010.0 1994 55.8
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2006.5 1969 55.9
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1986.5 1954 56.2
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1965.3 1953 55.6
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1962.2 2019 54.7
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1876.7 1934 55.0
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1849.7 2145 50.1
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1775.0 1614 60.2
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1685.2 1548 59.1
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1605.1 1342 65.1
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1533.5 1771 48.3
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1512.3 1914 47.0
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1407.1 1160 64.1
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1226.5 2217 37.8
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1191.4 1942 38.8
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1174.8 2173 36.7
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1113.2 2107 36.3
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.4e-295 1020.8 791 67.3
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.5e-252 877.9 1153 45.4
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 2.1e-246 857.4 687 65.1
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 8.0e-246 855.5 1389 40.6
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.3e-240 837.4 795 58.0
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.4e-237 828.2 795 57.9
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.2e-225 788.5 2086 30.5
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 6.6e-208 729.6 758 55.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 3.4e-204 717.2 803 53.2
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 7.6e-188 662.9 743 52.6
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 2.9e-131 474.9 451 56.3
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 7.8e-124 450.3 357 62.5
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 5.8e-95 354.4 380 52.9
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.1e-81 309.3 197 80.7
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 6.2e-73 281.2 223 64.1
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 6.4e-70 271.2 217 61.3
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 3.5e-68 265.4 312 52.6
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 4.9e-62 245.0 357 42.0
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 2.2e-57 229.6 124 87.9
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 3.2e-53 215.7 270 45.6
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 5.3e-40 171.8 259 44.4
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 2.9e-38 166.0 230 44.3
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.7e-33 149.1 131 56.5
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 2.2e-30 139.8 121 57.9
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 5.0e-30 138.7 80 82.5
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 5.9e-23 115.2 115 59.1
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 7.2e-21 108.2 203 38.9
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 1.1e-16 94.4 426 24.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 2.0e-15 90.1 61 67.2
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 7.7e-15 88.2 74 60.8
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 7.7e-15 88.2 68 60.3
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.2e-13 81.6 73 53.4
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 6.8e-11 75.1 71 53.5
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 7.8e-07 61.6 119 34.5


User provided reference genes

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