Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 2.4e-69 265.4 135 100.0
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 2.1e-25 119.4 106 61.3
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 1.4e-24 116.7 109 62.4
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 3.1e-24 115.5 111 61.3
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 2.0e-23 112.8 123 54.5
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 3.4e-23 112.1 114 60.5
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 2.9e-22 109.0 106 57.5
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 3.8e-22 108.6 108 57.4
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 1.4e-21 106.7 106 58.5
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.9e-21 106.3 106 58.5
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 1.9e-21 106.3 75 72.0
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 2.4e-21 105.9 106 55.7
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 3.2e-21 105.5 107 59.8
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 4.2e-21 105.1 111 57.7
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 4.2e-21 105.1 106 58.5
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 9.3e-21 104.0 106 60.4
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 1.2e-20 103.6 114 55.3
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 2.1e-20 102.8 112 56.2
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 3.5e-20 102.1 113 55.8
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 3.5e-20 102.1 113 55.8
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 3.5e-20 102.1 116 54.3
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 3.5e-20 102.1 82 68.3
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 4.6e-20 101.7 106 60.4
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 4.6e-20 101.7 106 59.4
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 7.9e-20 100.9 115 57.4
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 7.9e-20 100.9 114 58.8
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.0e-19 100.5 111 52.3
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 1.0e-19 100.5 87 60.9
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.0e-19 100.5 108 56.5
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 1.3e-19 100.1 79 68.4
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 1.3e-19 100.1 113 58.4
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 1.3e-19 100.1 107 57.0
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 2.3e-19 99.4 107 55.1
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 3.0e-19 99.0 67 70.1
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 3.0e-19 99.0 55 83.6
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 3.9e-19 98.6 109 55.0
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 5.1e-19 98.2 69 72.5
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 5.1e-19 98.2 108 55.6
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 5.1e-19 98.2 112 50.9
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 5.1e-19 98.2 55 81.8
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 6.7e-19 97.8 107 53.3
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 6.7e-19 97.8 107 53.3
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 6.7e-19 97.8 55 85.5
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 6.7e-19 97.8 60 75.0
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 8.7e-19 97.4 115 54.8
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 1.1e-18 97.1 130 47.7
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 1.5e-18 96.7 61 72.1
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 1.5e-18 96.7 84 58.3
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 1.9e-18 96.3 106 51.9
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 1.9e-18 96.3 106 51.9
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 2.5e-18 95.9 110 53.6
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 2.5e-18 95.9 59 76.3
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 2.5e-18 95.9 107 56.1
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 2.5e-18 95.9 106 56.6
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 3.3e-18 95.5 64 71.9
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 3.3e-18 95.5 59 76.3
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 3.3e-18 95.5 62 74.2
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 4.3e-18 95.1 104 52.9
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 4.3e-18 95.1 110 52.7
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 4.3e-18 95.1 106 55.7
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 4.3e-18 95.1 113 54.9
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 7.4e-18 94.4 68 67.6
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 7.4e-18 94.4 106 48.1
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 9.6e-18 94.0 54 79.6
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 9.6e-18 94.0 64 71.9
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 1.3e-17 93.6 93 57.0
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 1.3e-17 93.6 112 49.1
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 1.3e-17 93.6 59 74.6
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 1.3e-17 93.6 62 71.0
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 1.3e-17 93.6 100 59.0
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 1.3e-17 93.6 62 72.6
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 2.1e-17 92.8 49 87.8
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 3.6e-17 92.0 65 75.4
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 3.6e-17 92.0 106 51.9
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 3.6e-17 92.0 55 80.0
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 4.8e-17 91.7 106 55.7
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 4.8e-17 91.7 117 47.0
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 6.2e-17 91.3 64 67.2
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 1.4e-16 90.1 109 51.4
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 1.8e-16 89.7 114 50.0
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 1.8e-16 89.7 59 74.6
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 1.8e-16 89.7 91 51.6
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 2.4e-16 89.4 59 72.9
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 3.1e-16 89.0 61 65.6
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 5.3e-16 88.2 114 45.6
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 5.3e-16 88.2 54 75.9
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 5.3e-16 88.2 55 70.9
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 5.3e-16 88.2 77 59.7
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 5.3e-16 88.2 79 59.5
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 9.0e-16 87.4 113 47.8
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 9.0e-16 87.4 105 49.5
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 9.0e-16 87.4 64 65.6
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 1.2e-15 87.0 55 70.9
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 1.2e-15 87.0 64 65.6
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 1.5e-15 86.7 55 74.5
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 2.6e-15 85.9 55 70.9
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 4.5e-15 85.1 106 50.9
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 1.3e-14 83.6 84 52.4
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 1.7e-14 83.2 106 52.8
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 2.2e-14 82.8 106 52.8
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 2.2e-14 82.8 65 58.5
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 2.2e-14 82.8 54 70.4
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 4.9e-14 81.6 111 48.6
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 4.9e-14 81.6 106 50.9
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 6.4e-14 81.3 53 66.0
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 1.1e-13 80.5 90 45.6
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 4.2e-13 78.6 50 68.0
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 9.3e-13 77.4 72 50.0
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 1.2e-12 77.0 89 49.4
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 1.3e-11 73.6 54 59.3
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 1.8e-11 73.2 70 45.7
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 3.0e-11 72.4 110 45.5
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 1.1e-10 70.5 52 63.5
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 3.3e-10 68.9 57 52.6
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 1.6e-09 66.6 81 44.4
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 5.8e-07 58.2 113 46.0
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 1.0e-06 57.4 49 59.2
MBI13_g38674_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 1.7e-06 56.6 136 36.8


User provided reference genes

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