Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 3.5e-211 738.0 375 100.0
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 1.1e-143 513.8 396 73.5
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 2.5e-124 449.5 410 65.1
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 5.6e-116 421.8 399 64.4
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 9.2e-111 404.4 393 60.6
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 1.2e-110 404.1 397 61.2
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 2.7e-110 402.9 371 64.2
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 8.6e-109 397.9 382 61.3
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 8.1e-107 391.3 395 59.5
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 4.0e-106 389.0 404 60.9
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.6e-105 386.3 405 60.0
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 1.2e-102 377.5 408 62.0
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 3.6e-99 365.9 383 58.0
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 9.0e-98 361.3 405 59.0
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.5e-97 360.5 405 58.0
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 3.8e-96 355.9 382 55.8
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 6.4e-96 355.1 407 55.3
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 1.3e-93 347.4 357 58.3
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.4e-90 337.4 392 56.6
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 1.8e-90 337.0 403 55.8
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 2.4e-90 336.7 415 54.5
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.3e-88 330.9 388 54.6
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 4.9e-88 328.9 392 54.1
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 6.4e-88 328.6 407 56.0
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.5e-86 322.8 412 54.9
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 2.3e-85 320.1 408 53.7
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 5.1e-85 318.9 407 54.3
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 5.6e-84 315.5 373 55.5
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 7.4e-84 315.1 400 53.5
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 7.4e-84 315.1 405 53.1
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.2e-81 307.8 371 53.9
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 2.0e-81 307.0 389 53.0
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 3.4e-81 306.2 394 52.5
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 3.4e-81 306.2 376 53.5
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 4.5e-81 305.8 394 52.5
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 1.0e-80 304.7 403 51.6
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 6.5e-80 302.0 438 53.4
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.4e-79 300.8 401 49.6
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.4e-79 300.8 395 52.7
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.2e-78 297.7 398 50.0
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 3.5e-78 296.2 397 51.4
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 1.8e-77 293.9 378 52.4
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 2.3e-77 293.5 380 52.4
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 2.5e-76 290.0 384 52.1
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 3.7e-75 286.2 361 48.5
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 4.0e-74 282.7 371 52.3
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 5.3e-74 282.3 380 49.5
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 2.2e-72 276.9 383 48.0
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 7.1e-71 271.9 467 43.0
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 2.1e-70 270.4 360 51.4
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 2.7e-70 270.0 317 55.8
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 7.9e-70 268.5 360 53.6
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 2.3e-69 266.9 392 47.4
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 6.7e-69 265.4 392 48.7
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 9.7e-68 261.5 345 51.0
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 6.5e-64 248.8 382 46.1
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 2.3e-61 240.4 356 48.6
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 5.7e-60 235.7 378 47.4
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 3.7e-59 233.0 379 43.3
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 2.9e-56 223.4 417 45.1
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.1e-54 217.2 337 45.4
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 2.1e-54 217.2 350 47.7
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 3.6e-54 216.5 413 42.6
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 4.7e-54 216.1 386 41.5
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.8e-53 214.2 410 42.0
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 6.7e-53 212.2 314 46.2
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.5e-52 211.1 173 66.5
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 1.1e-50 204.9 381 39.6
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.1e-50 204.9 350 43.7
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.5e-49 201.1 386 40.9
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.0e-49 200.7 376 40.2
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 7.7e-49 198.7 277 48.7
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.3e-48 198.0 377 42.7
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 3.2e-47 193.4 362 44.5
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 4.2e-47 193.0 271 45.4
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 5.2e-45 186.0 418 39.7
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 9.7e-44 181.8 331 44.4
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 8.2e-43 178.7 349 38.1
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.6e-41 173.7 382 37.4
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 6.5e-40 169.1 372 36.0
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 6.5e-40 169.1 196 51.0
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.1e-39 168.3 354 39.3
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 1.1e-39 168.3 405 37.5
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 1.5e-39 167.9 385 38.2
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 4.2e-39 166.4 395 39.2
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.0e-37 161.8 338 39.3
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 2.3e-37 160.6 371 34.0
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 2.2e-35 154.1 399 35.3
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 6.3e-35 152.5 376 37.8
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.4e-34 150.6 315 36.5
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 2.4e-34 150.6 360 36.7
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 5.9e-33 146.0 288 42.4
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.5e-31 141.4 297 39.1
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 7.2e-31 139.0 356 33.4
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 2.3e-29 134.0 133 64.7
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.2e-28 131.7 289 35.3
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.6e-28 130.6 357 33.3
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.1e-26 125.2 368 30.2
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 3.1e-26 123.6 442 29.4
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 7.0e-26 122.5 132 62.9
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.7e-25 120.6 308 36.0
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 7.7e-25 119.0 325 33.5
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 2.9e-24 117.1 310 34.2
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 4.2e-23 113.2 84 61.9
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 4.7e-22 109.8 372 32.0
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 1.8e-21 107.8 330 32.4
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 2.3e-21 107.5 357 30.8
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 2.3e-21 107.5 357 30.8
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 1.2e-20 105.1 326 34.7
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 1.2e-20 105.1 368 30.2
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 2.0e-20 104.4 298 33.2
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.0e-20 104.4 298 33.2
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 2.6e-20 104.0 308 33.8
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 4.4e-20 103.2 296 33.1
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 4.4e-20 103.2 296 33.1
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 4.4e-20 103.2 296 33.1
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 7.5e-20 102.4 289 36.0
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.9e-19 100.5 153 49.7
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 4.9e-19 99.8 312 31.4
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 2.4e-18 97.4 354 30.8
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 3.2e-18 97.1 306 32.4
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 7.0e-18 95.9 81 58.0
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 1.2e-17 95.1 354 30.5
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 2.7e-17 94.0 212 39.6
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 3.5e-17 93.6 298 32.2
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 4.6e-17 93.2 280 33.6
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 5.9e-17 92.8 365 30.7
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.0e-16 92.0 355 30.1
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-16 91.7 313 30.4
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.3e-16 91.7 308 31.5
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 1.7e-16 91.3 362 31.2
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.7e-16 91.3 308 31.5
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.3e-16 90.9 173 41.0
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.9e-16 90.5 317 32.8
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 5.0e-16 89.7 441 27.7
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 6.6e-16 89.4 367 29.7
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 4.3e-15 86.7 358 29.6
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 9.5e-15 85.5 101 55.4
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 6.2e-14 82.8 221 34.4
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.1e-13 80.5 319 31.7
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 4.0e-13 80.1 318 30.8
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 6.8e-13 79.3 381 29.4
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 2.9e-11 73.9 47 83.0
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 7.8e-09 65.9 319 29.5
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.1e-07 62.0 144 36.1
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 1.6e-06 58.2 295 23.4


User provided reference genes

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