Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 5.5e-115 417.9 254 100.0
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 1.7e-60 236.9 257 61.5
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 7.5e-56 221.5 252 65.5
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.2e-53 214.2 259 58.7
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 2.0e-53 213.4 259 60.6
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 1.5e-51 207.2 257 59.5
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 3.3e-51 206.1 257 59.5
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 1.6e-50 203.8 255 56.9
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 2.8e-50 203.0 257 59.1
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 6.2e-50 201.8 255 57.3
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 1.4e-49 200.7 225 62.2
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 1.2e-48 197.6 247 56.7
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 9.2e-46 188.0 254 55.9
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 1.1e-43 181.0 119 75.6
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 2.5e-43 179.9 185 63.8
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 2.5e-43 179.9 119 74.8
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 4.3e-43 179.1 254 54.3
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 1.6e-42 177.2 106 84.9
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 2.1e-42 176.8 261 50.6
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 4.7e-42 175.6 184 64.1
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 6.2e-42 175.3 120 74.2
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 1.4e-41 174.1 120 70.0
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 1.8e-41 173.7 120 73.3
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 1.8e-41 173.7 114 74.6
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 2.3e-41 173.3 113 76.1
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 2.3e-41 173.3 125 70.4
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 3.1e-41 172.9 261 55.6
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 3.1e-41 172.9 266 52.6
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 3.1e-41 172.9 114 72.8
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 8.9e-41 171.4 119 71.4
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 1.2e-40 171.0 113 74.3
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 2.0e-40 170.2 109 78.0
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 4.4e-40 169.1 126 71.4
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 4.4e-40 169.1 116 70.7
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 7.5e-40 168.3 260 52.7
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 7.5e-40 168.3 108 77.8
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 9.8e-40 167.9 113 74.3
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 9.8e-40 167.9 108 76.9
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.7e-39 167.2 246 57.3
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 2.2e-39 166.8 252 52.8
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 2.9e-39 166.4 231 51.5
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 3.7e-39 166.0 111 73.9
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 4.9e-39 165.6 109 74.3
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 4.9e-39 165.6 256 53.9
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 6.4e-39 165.2 112 75.9
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 1.4e-38 164.1 110 73.6
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.4e-38 164.1 249 53.4
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.4e-38 164.1 113 73.5
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 1.9e-38 163.7 110 72.7
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 1.9e-38 163.7 194 63.4
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.9e-38 163.7 267 50.2
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 2.4e-38 163.3 114 67.5
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 3.2e-38 162.9 209 57.4
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 3.2e-38 162.9 115 70.4
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 3.2e-38 162.9 250 55.2
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 3.2e-38 162.9 256 46.1
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 4.1e-38 162.5 121 67.8
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 5.4e-38 162.2 190 62.6
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 7.1e-38 161.8 113 69.9
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 9.2e-38 161.4 111 70.3
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.2e-37 161.0 256 50.8
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.2e-37 161.0 113 69.9
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.2e-37 161.0 249 51.4
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 2.1e-37 160.2 177 54.8
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 2.1e-37 160.2 193 64.2
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 2.7e-37 159.8 111 72.1
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 2.7e-37 159.8 113 71.7
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.6e-37 159.1 175 63.4
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 6.0e-37 158.7 252 52.0
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 6.0e-37 158.7 252 53.6
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 7.8e-37 158.3 255 52.2
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 7.8e-37 158.3 254 52.0
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 7.8e-37 158.3 111 72.1
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 7.8e-37 158.3 111 72.1
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 1.3e-36 157.5 255 51.8
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.3e-36 157.5 115 67.8
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 1.7e-36 157.1 107 72.9
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 3.0e-36 156.4 258 52.3
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 3.0e-36 156.4 260 44.2
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 5.1e-36 155.6 263 49.0
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 5.1e-36 155.6 118 66.1
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 6.6e-36 155.2 108 72.2
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 6.6e-36 155.2 104 73.1
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 6.6e-36 155.2 254 50.0
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.1e-35 154.5 116 66.4
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 1.1e-35 154.5 107 72.9
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 2.5e-35 153.3 112 67.9
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 2.5e-35 153.3 186 59.7
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 3.3e-35 152.9 263 47.9
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 5.6e-35 152.1 133 60.9
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 7.3e-35 151.8 266 48.9
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 7.3e-35 151.8 254 48.8
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 9.5e-35 151.4 111 68.5
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 1.2e-34 151.0 112 66.1
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 1.6e-34 150.6 260 50.0
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 1.6e-34 150.6 260 50.0
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 2.8e-34 149.8 114 64.9
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 2.8e-34 149.8 114 64.9
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.8e-34 149.8 113 63.7
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 8.1e-34 148.3 112 61.6
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.1e-33 147.9 110 66.4
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.1e-33 147.9 110 65.5
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.8e-33 147.1 115 63.5
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 2.3e-33 146.7 113 61.9
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 4.0e-33 146.0 127 61.4
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 5.2e-33 145.6 108 66.7
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 6.8e-33 145.2 110 65.5
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 6.8e-33 145.2 114 59.6
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 1.2e-32 144.4 195 53.3
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 3.4e-32 142.9 91 73.6
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 4.4e-32 142.5 112 65.2
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 3.8e-31 139.4 251 44.2
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.8e-31 139.4 110 61.8
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 4.1e-30 136.0 114 59.6
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 9.2e-30 134.8 107 61.7
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.2e-29 134.4 302 43.7
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 1.6e-29 134.0 107 59.8
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 1.6e-29 134.0 107 60.7
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 2.1e-29 133.7 107 60.7
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 3.5e-29 132.9 107 59.8
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 3.5e-29 132.9 107 59.8
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 3.5e-29 132.9 107 59.8
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 3.5e-29 132.9 107 59.8
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 3.5e-29 132.9 107 59.8
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 3.5e-29 132.9 102 63.7
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 7.8e-29 131.7 107 59.8
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 1.0e-28 131.3 97 64.9
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 2.3e-28 130.2 110 64.5
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 3.9e-28 129.4 102 59.8
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 3.9e-28 129.4 104 60.6
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.9e-28 129.4 311 40.8
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.1e-27 127.9 107 57.9
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 1.6e-26 124.0 95 62.1
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.1e-25 121.3 103 54.4
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 9.9e-24 114.8 104 57.7
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.2e-21 107.8 85 60.0
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 2.3e-20 103.6 111 53.2
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 3.1e-17 93.2 81 61.7
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 1.4e-14 84.3 64 68.8
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 1.3e-10 71.2 128 44.5
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 2.4e-09 67.0 215 42.8
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 5.8e-08 62.4 96 43.8
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 9.9e-08 61.6 101 38.6
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 9.9e-08 61.6 215 41.4
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.3e-07 61.2 102 38.2
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 1.3e-07 61.2 102 38.2
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 2.2e-07 60.5 104 35.6
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 2.9e-07 60.1 102 34.3
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 3.8e-07 59.7 103 38.8
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 4.9e-07 59.3 103 38.8
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 6.4e-07 58.9 103 36.9
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 6.4e-07 58.9 103 36.9
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 6.4e-07 58.9 103 36.9
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 8.4e-07 58.5 95 40.0
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 1.1e-06 58.2 102 37.3
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 1.1e-06 58.2 103 35.9
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 1.1e-06 58.2 102 37.3
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 1.1e-06 58.2 102 37.3
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 1.1e-06 58.2 100 37.0
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 1.4e-06 57.8 101 35.6
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 1.4e-06 57.8 102 35.3
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 2.4e-06 57.0 102 36.3
A09p32970 Brassica napus HOM05D008080 ORTHO05D010244 3.2e-06 56.6 104 35.6
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 4.2e-06 56.2 103 35.0
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 4.2e-06 56.2 101 34.7
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 5.5e-06 55.8 101 33.7
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 7.1e-06 55.5 102 35.3
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 9.3e-06 55.1 103 35.9
BcaC08g43879 Brassica carinata HOM05D008080 ORTHO05D010244 9.3e-06 55.1 104 34.6
BolC6t36418H Brassica oleracea HOM05D008080 ORTHO05D010244 9.3e-06 55.1 104 34.6
BraA09t38837Z Brassica rapa HOM05D008080 ORTHO05D010244 9.3e-06 55.1 104 34.6
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 9.3e-06 55.1 103 35.0
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 9.3e-06 55.1 100 38.0
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 9.3e-06 55.1 100 33.0
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 9.3e-06 55.1 100 33.0
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 9.3e-06 55.1 101 34.7


User provided reference genes

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