Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 3.3e-286 987.6 485 100.0
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 3.4e-251 871.3 485 88.0
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 3.5e-243 844.7 484 85.3
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 3.8e-242 841.3 484 84.7
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 5.0e-242 840.9 486 85.0
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 9.4e-241 836.6 486 84.4
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.6e-240 835.9 486 84.6
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 4.7e-240 834.3 516 81.0
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 1.4e-239 832.8 484 83.3
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.8e-239 832.4 486 84.0
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 2.3e-239 832.0 484 83.5
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 4.0e-239 831.2 488 83.6
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 4.0e-239 831.2 485 83.5
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 4.0e-239 831.2 485 84.1
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 4.0e-239 831.2 485 84.3
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 5.2e-239 830.9 487 82.8
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 8.8e-239 830.1 485 83.7
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 4.4e-238 827.8 484 82.9
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 2.8e-237 825.1 485 84.1
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 6.3e-237 823.9 485 82.3
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 3.1e-236 821.6 484 82.9
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 2.0e-235 818.9 487 83.2
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 4.5e-235 817.8 484 82.2
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 4.5e-235 817.8 487 83.2
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 5.9e-235 817.4 486 81.3
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.3e-234 816.2 485 82.1
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 1.7e-234 815.8 485 82.3
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 5.0e-234 814.3 485 82.3
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 8.5e-234 813.5 486 81.9
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 8.5e-234 813.5 485 81.9
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 1.5e-233 812.8 485 81.9
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 7.2e-233 810.4 486 81.9
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 2.7e-232 808.5 485 81.6
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 3.6e-232 808.1 485 81.2
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 6.1e-232 807.4 485 83.1
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 8.0e-232 807.0 488 82.6
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.0e-231 806.6 487 81.1
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.4e-231 806.2 487 81.1
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.4e-231 806.2 487 81.1
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 1.4e-231 806.2 485 81.2
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 3.0e-231 805.1 486 81.3
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.0e-231 805.1 485 81.4
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.0e-231 804.7 485 81.4
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 5.2e-231 804.3 491 81.3
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 8.8e-231 803.5 485 81.4
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 3.4e-230 801.6 486 81.3
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 4.4e-230 801.2 483 81.4
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 5.7e-230 800.8 491 80.7
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 7.5e-230 800.4 485 81.0
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 1.7e-229 799.3 485 80.8
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 2.8e-229 798.5 485 81.0
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 6.3e-229 797.3 485 80.0
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 6.3e-229 797.3 485 80.4
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 1.1e-228 796.6 485 80.8
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 1.4e-228 796.2 485 79.6
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.8e-228 795.8 485 81.0
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 2.4e-228 795.4 485 80.6
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 4.1e-228 794.7 483 81.8
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 1.2e-227 793.1 485 80.6
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 1.6e-227 792.7 485 80.2
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 4.5e-227 791.2 486 79.2
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 7.7e-227 790.4 488 79.3
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 7.7e-227 790.4 485 80.4
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 1.7e-226 789.3 486 80.5
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 2.2e-226 788.9 485 79.2
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 2.2e-226 788.9 486 79.8
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 2.9e-226 788.5 487 80.1
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 5.0e-226 787.7 486 78.8
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 5.0e-226 787.7 485 79.8
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 8.5e-226 786.9 486 79.2
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.9e-225 785.8 486 79.4
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 5.5e-225 784.3 485 79.8
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 2.8e-224 781.9 483 79.1
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 2.8e-224 781.9 487 79.1
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 5.2e-223 777.7 485 78.1
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 5.2e-223 777.7 485 79.0
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 8.8e-223 776.9 486 79.0
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 1.2e-222 776.5 487 78.6
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.7e-222 774.2 486 78.8
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 9.8e-222 773.5 420 87.9
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 2.8e-221 771.9 487 79.3
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 3.7e-221 771.5 484 77.5
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.7e-221 771.5 486 78.8
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 1.3e-218 763.1 488 78.1
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 6.6e-218 760.8 486 78.6
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.5e-217 759.6 485 77.5
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 3.3e-217 758.4 488 77.9
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 3.3e-217 758.4 488 77.9
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 6.8e-215 750.7 488 77.0
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 2.6e-214 748.8 485 77.3
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 9.8e-214 746.9 484 77.5
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 6.4e-213 744.2 485 76.5
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 1.1e-212 743.4 483 77.2
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 5.4e-212 741.1 482 76.8
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 7.0e-212 740.7 484 76.9
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 7.0e-212 740.7 483 76.6
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 9.2e-212 740.3 485 76.3
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 1.3e-210 736.5 486 75.7
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 9.8e-206 720.3 454 78.2
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 2.1e-200 702.6 450 77.6
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 1.5e-198 696.4 428 76.4
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 1.3e-194 683.3 422 77.3
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 3.9e-194 681.8 423 76.1
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 1.1e-193 680.2 483 72.0
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 1.5e-193 679.9 430 75.6
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 2.3e-191 672.5 389 79.9
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 6.9e-183 644.4 385 81.0
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 8.7e-178 627.5 392 74.7
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 6.4e-173 611.3 433 71.8
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 6.7e-170 601.3 389 69.7
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 5.6e-169 598.2 495 65.1
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 3.8e-165 585.5 391 68.0
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 2.4e-159 566.2 289 93.8
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 1.0e-157 560.8 289 92.7
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 5.9e-142 508.4 344 73.3
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.0e-134 483.4 365 66.0
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 9.2e-103 378.3 268 70.5
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.6e-102 377.5 237 76.8
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.3e-84 316.6 172 86.0
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 1.7e-61 241.1 130 85.4
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.1e-61 239.6 196 61.7
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 3.3e-60 236.9 139 82.0
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.6e-60 236.1 135 83.7
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 3.8e-48 196.8 140 72.1
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 5.5e-47 193.0 159 63.5
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 2.3e-37 161.0 94 83.0
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 3.2e-31 140.6 105 64.8
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 8.0e-14 82.8 59 66.1
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 3.3e-12 77.4 284 26.4
vmacro03459 Vaccinium macrocarpon HOM05D000776 ORTHO05D002281 4.5e-09 67.0 422 23.5
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.0e-08 65.9 127 33.9
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 5.0e-08 63.5 131 32.1
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 2.5e-07 61.2 155 27.7
Aqoxy3G04099 Aquilegia oxysepala HOM05D000776 ORTHO05D002281 4.2e-07 60.5 183 29.5
HanXRQChr10g0316991 Helianthus annuus HOM05D000776 ORTHO05D001624 5.5e-07 60.1 129 29.5
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 5.5e-07 60.1 170 26.5
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 7.2e-07 59.7 150 27.3
Lalb_Chr16g0390661 Lupinus albus HOM05D000776 ORTHO05D001624 7.2e-07 59.7 152 30.3
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 7.2e-07 59.7 170 25.9
Pp3c14_11550 Physcomitrium patens HOM05D000776 ORTHO05D002281 7.2e-07 59.7 184 29.3
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 9.4e-07 59.3 124 28.2
Nn2g15146 Nelumbo nucifera HOM05D000776 ORTHO05D001624 9.4e-07 59.3 127 30.7
Haze_27503 Corylus avellana HOM05D000776 ORTHO05D002281 1.2e-06 58.9 159 29.6
BraA01t02620Z Brassica rapa HOM05D000776 ORTHO05D001624 1.6e-06 58.5 152 24.3
CiPaw.11G120200 Carya illinoinensis HOM05D000776 ORTHO05D001624 1.6e-06 58.5 128 28.1
THA.LOC104806245 Tarenaya hassleriana HOM05D000776 ORTHO05D002281 2.1e-06 58.2 194 28.9
FAN18G4093 Fragaria x ananassa HOM05D000776 ORTHO05D001624 4.7e-06 57.0 124 28.2
Lalb_Chr09g0320631 Lupinus albus HOM05D000776 ORTHO05D001624 6.1e-06 56.6 151 29.1


User provided reference genes

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