Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 3.0e-137 491.9 257 100.0
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 3.5e-85 318.9 260 68.5
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.2e-82 310.5 255 67.1
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.7e-76 290.0 259 64.1
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.6e-75 285.0 254 61.4
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.2e-74 283.9 255 63.1
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.1e-74 283.1 254 63.0
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 4.7e-74 282.0 254 61.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 8.9e-73 277.7 257 61.9
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 7.6e-72 274.6 259 60.2
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.3e-71 273.9 260 60.0
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 3.8e-71 272.3 271 59.4
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 6.4e-71 271.6 258 61.2
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 6.4e-71 271.6 259 61.0
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 4.1e-70 268.9 266 59.8
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.9e-67 260.0 279 57.7
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 3.3e-67 259.2 254 58.7
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 4.3e-67 258.8 260 56.9
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 3.6e-66 255.8 257 58.0
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 3.6e-66 255.8 260 56.9
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.7e-66 255.4 255 60.8
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 4.0e-65 252.3 258 53.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 8.9e-65 251.1 265 55.1
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-64 250.8 227 61.7
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.5e-64 250.4 254 60.2
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 7.6e-64 248.1 260 56.2
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 7.6e-64 248.1 259 56.4
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.4e-62 243.0 269 56.1
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.2e-61 240.7 260 55.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.1e-61 240.0 258 53.9
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 6.0e-61 238.4 322 47.8
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.0e-60 237.7 272 53.3
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 7.3e-59 231.5 263 51.7
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.6e-58 230.3 264 54.5
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.2e-58 228.4 256 52.7
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 6.2e-58 228.4 250 54.8
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.1e-58 228.0 268 53.0
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.1e-57 227.6 258 52.3
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.8e-57 226.9 268 53.0
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.4e-57 226.5 258 53.1
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.1e-57 226.1 268 53.4
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 4.0e-57 225.7 286 50.3
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 4.0e-57 225.7 263 53.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.2e-56 224.2 268 52.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.6e-56 223.0 269 53.2
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 3.4e-56 222.6 258 53.9
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 3.4e-56 222.6 259 52.9
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 4.5e-56 222.2 261 51.0
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 5.8e-56 221.9 263 51.3
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 5.8e-56 221.9 198 61.1
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 9.9e-56 221.1 258 50.4
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.7e-55 220.3 264 51.1
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 2.2e-55 219.9 263 49.4
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 4.9e-55 218.8 260 51.9
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 6.4e-55 218.4 235 54.0
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.4e-54 217.2 258 53.1
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.4e-54 217.2 249 52.6
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 2.4e-54 216.5 261 49.4
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.4e-54 216.5 256 52.3
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.2e-54 216.1 180 62.2
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 7.1e-54 214.9 258 48.4
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 7.1e-54 214.9 249 53.0
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 9.3e-54 214.5 263 49.8
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 9.3e-54 214.5 263 49.8
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.1e-53 213.4 259 49.0
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.7e-53 213.0 246 51.6
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 3.5e-53 212.6 260 51.5
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 4.6e-53 212.2 265 49.8
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 6.0e-53 211.8 250 53.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 3.0e-52 209.5 256 50.0
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 3.0e-52 209.5 250 50.4
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 5.1e-52 208.8 255 49.0
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 6.7e-52 208.4 255 50.6
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 6.7e-52 208.4 269 49.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 6.7e-52 208.4 250 52.0
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 8.7e-52 208.0 254 49.6
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 8.7e-52 208.0 254 49.6
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.1e-51 207.6 262 50.0
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.1e-51 207.6 251 50.6
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.5e-51 207.2 246 50.4
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.5e-51 207.2 257 49.8
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.9e-51 206.8 237 54.9
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 7.4e-51 204.9 264 50.0
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.4e-51 204.9 191 62.3
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.6e-50 203.8 259 51.0
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 2.1e-50 203.4 261 46.4
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.8e-49 200.3 260 49.6
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.8e-49 200.3 262 48.5
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.8e-49 200.3 259 50.6
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 3.1e-49 199.5 267 47.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 5.3e-49 198.7 267 47.6
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 5.3e-49 198.7 254 46.5
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.9e-49 198.4 268 48.5
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 9.0e-49 198.0 271 48.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.0e-48 196.8 264 47.3
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.5e-48 195.7 260 48.5
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 4.5e-48 195.7 259 45.9
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 4.5e-48 195.7 255 47.8
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.3e-47 194.1 172 58.7
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.2e-47 193.4 256 46.9
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 4.9e-47 192.2 252 48.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.2e-46 189.5 254 45.3
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.6e-45 187.2 248 46.8
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.1e-43 181.0 260 43.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.1e-43 181.0 372 36.8
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.5e-43 180.6 256 46.5
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.3e-43 179.5 259 44.8
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 7.4e-43 178.3 270 44.1
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 2.1e-42 176.8 284 42.6
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 4.8e-42 175.6 174 52.9
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.8e-42 175.6 296 40.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 4.0e-41 172.6 253 44.7
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.3e-39 167.5 260 43.5
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.3e-39 167.5 257 40.9
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.8e-39 166.0 155 60.0
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 4.9e-39 165.6 248 43.5
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.1e-38 164.5 254 44.1
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.7e-37 159.8 274 42.3
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.5e-37 159.5 172 48.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.3e-36 157.5 243 41.2
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 6.7e-36 155.2 265 39.2
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.1e-35 154.5 250 43.2
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 4.3e-35 152.5 169 49.1
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.6e-34 150.6 272 41.2
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.2e-31 140.2 365 31.2
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 5.0e-31 139.0 295 37.6
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 3.2e-30 136.3 152 50.0
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 4.2e-30 136.0 137 54.0
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.2e-29 134.4 254 40.6
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 6.7e-28 128.6 144 54.2
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 6.9e-25 118.6 220 36.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-24 117.5 158 46.2
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.9e-23 113.2 127 53.5
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.3e-20 103.6 136 43.4
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 8.8e-20 101.7 129 50.4
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.0e-19 100.5 67 73.1
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 8.2e-18 95.1 60 71.7
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.4e-17 93.6 134 45.5
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.1e-17 93.2 131 43.5
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 5.3e-17 92.4 221 36.7
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.2e-16 91.3 203 34.0
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.5e-16 90.9 186 33.9
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.5e-16 90.9 165 35.8
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.3e-10 71.2 72 52.8
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 4.8e-10 69.3 227 33.0
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 6.3e-10 68.9 91 56.0
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.6e-08 63.5 43 58.1
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.6e-08 63.5 43 58.1
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 1.7e-07 60.8 95 45.3
PGSC0003DMG400032808 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.4e-06 55.1 94 42.6


User provided reference genes

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