Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1542.3 751 100.0
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1377.1 752 88.7
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1290.4 751 83.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1266.5 751 82.6
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1265.8 751 82.2
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1263.8 751 82.2
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1255.4 750 80.7
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1237.6 750 79.3
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1229.2 749 79.3
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1226.5 757 79.5
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1226.5 752 79.9
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1223.4 752 79.9
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1220.7 752 79.8
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1213.0 752 79.5
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1211.8 752 79.0
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1210.7 763 77.7
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1202.2 776 75.4
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1185.2 751 77.6
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1181.8 750 78.0
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1176.4 776 74.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1175.2 785 74.4
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1173.3 752 77.1
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1172.1 753 77.2
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1166.0 750 76.7
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 0.0e+00 1165.6 751 75.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1164.8 752 76.9
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1146.0 775 72.8
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1138.6 751 75.1
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1138.3 774 71.6
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1133.6 756 73.0
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1118.6 775 72.4
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1116.3 775 72.3
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1114.4 752 74.7
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1114.0 770 70.0
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1112.4 770 70.3
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1112.1 772 72.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1111.3 773 71.7
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1109.7 769 71.9
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1109.4 767 70.1
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1107.8 721 76.1
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1106.3 767 70.0
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1104.7 768 69.0
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1104.7 774 69.9
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1103.2 756 71.7
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1099.0 777 70.0
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1098.2 755 71.9
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1097.8 773 68.7
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1096.6 772 70.3
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1096.3 756 71.3
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 754 70.7
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 771 70.0
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 755 71.0
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 771 70.0
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1092.8 756 72.6
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1090.1 770 70.0
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 756 71.3
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1089.3 798 68.5
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1088.6 755 71.4
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1086.6 770 70.1
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1086.2 783 69.2
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 773 68.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 761 70.3
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 5.1e-312 1074.7 774 69.1
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.6e-311 1071.6 774 68.5
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 6.2e-311 1070.5 759 69.8
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.3e-310 1069.3 752 71.1
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 2.3e-310 1068.5 749 69.3
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 2.3e-310 1068.5 750 69.1
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 5.6e-309 1063.9 751 71.9
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 7.3e-309 1063.5 775 67.7
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 7.3e-309 1063.5 749 68.9
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 3.6e-308 1061.2 750 68.7
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 8.1e-308 1060.1 751 68.6
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.8e-307 1058.9 754 69.1
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 4.0e-307 1057.7 750 68.9
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 6.9e-307 1057.0 752 68.1
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.6e-306 1055.0 774 67.6
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 7.6e-306 1053.5 774 67.2
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 9.9e-306 1053.1 774 67.4
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 9.9e-306 1053.1 774 67.4
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.7e-305 1052.4 753 68.0
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.4e-304 1049.3 767 68.2
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.0e-302 1043.1 767 68.1
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.3e-302 1042.0 754 67.5
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.9e-302 1041.2 765 67.8
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.5e-301 1039.3 756 67.3
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 3.3e-301 1038.1 777 66.8
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.3e-300 1036.2 834 64.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 3.4e-298 1028.1 771 66.9
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 6.4e-297 1023.8 766 66.3
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.7e-295 1018.5 770 65.5
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 4.6e-295 1017.7 742 69.3
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.9e-293 1012.3 767 64.8
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 4.3e-293 1011.1 765 67.2
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.3e-293 1011.1 775 65.4
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 1.5e-290 1002.7 775 64.6
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.2e-289 998.8 803 64.4
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 4.9e-289 997.7 766 66.4
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 8.4e-289 996.9 776 64.8
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 5.5e-288 994.2 806 61.7
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.3e-286 989.6 765 65.0
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 5.1e-286 987.6 813 60.8
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 6.7e-286 987.3 759 66.0
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.2e-284 980.3 769 64.6
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.1e-283 979.9 776 62.9
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.8e-283 979.2 774 63.0
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.8e-283 979.2 682 72.6
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.3e-281 973.0 776 63.5
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.7e-281 972.6 775 62.2
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.8e-281 971.5 774 63.2
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 3.2e-280 968.4 779 62.4
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 9.3e-280 966.8 778 62.9
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.2e-279 966.5 777 62.3
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.2e-279 966.5 763 62.9
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 4.6e-279 964.5 772 62.0
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 3.9e-278 961.4 775 61.3
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 5.1e-278 961.1 775 62.2
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 8.7e-278 960.3 776 62.6
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.3e-277 958.4 776 63.0
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 4.3e-277 958.0 772 63.0
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.0e-273 946.8 777 61.0
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.8e-270 936.0 766 61.2
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.1e-269 933.3 777 61.5
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 8.2e-268 927.2 705 66.2
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.5e-266 922.9 758 63.5
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 7.7e-266 920.6 758 63.5
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 6.1e-263 911.0 756 61.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 3.0e-262 908.7 766 60.2
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.0e-259 897.5 763 58.3
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.2e-258 896.7 769 58.8
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 3.3e-253 878.6 696 66.4
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.8e-251 872.8 768 58.3
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.6e-250 869.8 766 59.1
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.5e-248 862.4 766 59.0
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 7.2e-248 860.9 771 58.0
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.4e-246 856.7 664 64.8
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 7.7e-242 840.9 730 57.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.0e-217 760.8 738 54.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.1e-186 656.8 421 73.9
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.6e-183 647.1 418 77.0
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.6e-183 646.0 778 45.5
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 3.1e-182 642.9 742 46.8
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 6.9e-182 641.7 750 47.6
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.8e-172 609.4 717 45.6
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 4.2e-171 605.9 778 45.1
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.6e-167 594.0 787 43.1
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 7.7e-157 558.5 784 40.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.9e-155 553.9 387 69.3
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.9e-155 553.9 387 69.0
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.0e-152 543.9 278 89.9
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 5.3e-150 535.8 392 67.1
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.8e-135 486.9 555 46.5
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.0e-129 468.4 467 55.0
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 9.8e-120 435.3 254 80.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.0e-114 415.6 473 46.7
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.3e-100 371.7 740 34.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-78 298.9 278 55.8
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.9e-71 274.2 756 29.1
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.1e-54 219.2 288 43.8
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 7.1e-54 216.5 190 57.4
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.1e-49 202.6 142 69.7
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.5e-46 191.4 149 66.4
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-39 168.7 82 86.6
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.8e-31 141.0 65 90.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-26 125.6 153 41.8
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-22 111.7 144 38.9
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 2.7e-13 81.6 88 47.7
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.4e-12 79.3 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 2.3e-12 78.6 108 42.6
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.5e-11 75.9 66 54.5
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 2.8e-10 71.6 101 39.6


User provided reference genes

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