Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 5.5e-173 610.9 319 100.0
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 3.2e-120 435.6 321 70.7
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 7.9e-111 404.4 321 67.9
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 5.1e-110 401.7 323 65.3
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.1e-110 401.7 320 67.5
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 7.3e-109 397.9 321 68.2
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.6e-108 396.7 323 66.9
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 2.8e-108 396.0 320 68.4
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.6e-108 395.6 319 64.9
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 2.4e-107 392.9 326 64.1
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 2.9e-105 386.0 321 64.2
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 4.9e-105 385.2 321 63.9
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 7.1e-104 381.3 321 64.5
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 3.5e-103 379.0 317 66.6
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 1.0e-102 377.5 321 64.2
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 1.8e-102 376.7 320 64.4
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 1.8e-102 376.7 321 65.7
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 3.9e-102 375.6 316 64.9
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 5.1e-102 375.2 325 62.8
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.5e-101 373.6 323 63.5
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.5e-101 373.6 323 63.5
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.9e-101 373.2 321 64.2
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.9e-101 373.2 319 62.4
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 5.6e-101 371.7 319 64.3
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.6e-100 370.2 322 63.0
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 4.8e-100 368.6 323 62.8
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 4.8e-100 368.6 321 62.3
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 8.1e-100 367.9 317 63.4
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.8e-99 366.7 322 64.0
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 2.4e-99 366.3 321 61.4
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 5.3e-99 365.2 321 62.3
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 6.9e-99 364.8 322 61.2
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 9.0e-99 364.4 324 59.9
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 1.5e-98 363.6 318 64.8
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 1.5e-98 363.6 319 63.6
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.5e-98 363.6 318 59.1
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 4.5e-98 362.1 320 63.4
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 5.8e-98 361.7 320 63.1
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 7.6e-98 361.3 219 79.5
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.3e-97 360.5 321 60.7
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.7e-97 360.1 320 63.1
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 2.2e-97 359.8 319 59.6
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 2.2e-97 359.8 319 62.4
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.8e-97 359.0 292 64.7
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 3.8e-97 359.0 236 72.5
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 8.4e-97 357.8 323 60.1
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.1e-96 357.5 317 59.6
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.4e-96 357.1 327 61.2
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 1.4e-96 357.1 343 61.2
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.9e-96 356.7 317 59.3
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.9e-96 356.7 324 58.3
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.9e-96 356.7 321 60.1
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.9e-96 356.7 320 60.9
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 2.5e-96 356.3 318 61.0
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 3.2e-96 355.9 320 61.2
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 4.2e-96 355.5 341 59.8
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 4.2e-96 355.5 219 77.6
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 5.5e-96 355.1 232 74.1
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 7.1e-96 354.8 323 61.0
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 9.3e-96 354.4 319 60.8
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.2e-95 354.0 319 62.1
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 1.6e-95 353.6 317 59.3
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.7e-95 352.8 322 61.2
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.3e-94 350.5 328 58.2
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 1.3e-94 350.5 319 60.2
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 1.8e-94 350.1 204 81.9
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 2.3e-94 349.7 322 60.9
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.3e-94 349.7 322 57.5
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 3.9e-94 349.0 319 59.6
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 5.1e-94 348.6 317 59.6
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 5.1e-94 348.6 318 58.8
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 6.7e-94 348.2 319 60.8
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 8.7e-94 347.8 318 59.1
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-93 347.4 319 61.1
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 3.3e-93 345.9 318 60.1
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 3.3e-93 345.9 318 60.1
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 3.3e-93 345.9 317 58.7
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 5.7e-93 345.1 317 59.0
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 9.6e-93 344.4 322 60.6
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 4.8e-92 342.0 312 59.9
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 4.8e-92 342.0 220 74.1
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 4.8e-92 342.0 318 59.7
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 6.2e-92 341.7 217 76.0
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.8e-91 340.1 221 73.8
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 4.1e-91 339.0 318 59.1
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 5.3e-91 338.6 317 60.3
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 9.0e-91 337.8 220 74.1
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 2.0e-90 336.7 324 61.4
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 5.8e-90 335.1 211 76.3
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 7.6e-90 334.7 222 73.4
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.3e-89 334.0 214 74.3
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 2.2e-89 333.2 232 68.5
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 2.9e-89 332.8 321 55.5
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 3.8e-89 332.4 233 70.8
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 5.0e-89 332.0 214 73.8
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 6.5e-89 331.6 218 73.4
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 1.1e-88 330.9 299 61.5
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 7.2e-88 328.2 226 68.6
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 2.1e-87 326.6 326 55.5
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.1e-85 320.9 308 58.4
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 1.1e-85 320.9 230 67.0
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.5e-85 320.5 296 62.2
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 4.8e-84 315.5 215 70.7
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 8.2e-84 314.7 331 52.3
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 4.1e-83 312.4 198 74.7
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 6.9e-83 311.6 292 59.6
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 3.4e-82 309.3 212 68.4
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.9e-80 303.5 212 65.1
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 2.7e-79 299.7 222 68.5
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.4e-75 286.6 280 57.5
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 4.5e-74 282.3 214 63.1
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 5.9e-74 282.0 343 52.8
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 5.5e-72 275.4 212 59.9
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.7e-68 263.8 204 64.2
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 3.7e-68 262.7 271 56.8
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 7.7e-66 255.0 225 56.0
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 2.6e-61 240.0 235 51.5
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 9.7e-61 238.0 192 63.5
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 2.0e-58 230.3 191 62.8
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 2.5e-48 196.8 184 53.8
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.0e-46 191.4 144 63.9
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.8e-43 180.6 109 78.9
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 3.8e-41 172.9 207 45.4
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 2.3e-38 163.7 166 53.0
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 3.9e-33 146.4 203 38.4
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 5.0e-33 146.0 83 80.7
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 6.6e-33 145.6 83 81.9
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 4.3e-32 142.9 108 63.9
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 4.4e-29 132.9 125 52.8
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-27 128.3 68 85.3
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 7.0e-27 125.6 83 72.3
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 9.2e-27 125.2 142 40.8
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 2.8e-23 113.6 199 33.2
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 4.9e-20 102.8 158 43.0
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-16 91.7 53 77.4
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.1e-16 91.7 162 38.9
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.9e-11 74.3 105 43.8
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 4.1e-11 73.2 155 36.1
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 1.6e-10 71.2 83 48.2
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 2.5e-08 63.9 31 87.1
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 2.8e-07 60.5 64 50.0
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 8.1e-07 58.9 77 45.5
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 1.8e-06 57.8 28 85.7
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 6.8e-06 55.8 35 71.4


User provided reference genes

Program Settings