Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 4.6e-189 664.5 352 100.0
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 2.2e-146 522.7 348 80.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 9.2e-137 490.7 351 76.6
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.5e-131 473.4 351 73.8
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 2.6e-131 472.6 341 74.5
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 2.2e-130 469.5 351 73.8
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.4e-129 466.8 351 72.4
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 7.8e-128 461.1 351 71.5
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.9e-126 456.4 344 71.5
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 2.5e-126 456.1 430 62.8
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 5.6e-126 454.9 355 71.5
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 6.2e-125 451.4 350 69.1
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.4e-124 450.3 355 71.0
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 1.4e-124 450.3 356 71.3
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 5.8e-123 444.9 339 69.9
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.9e-121 439.9 341 71.3
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 9.2e-121 437.6 350 69.4
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.9e-119 432.2 322 72.4
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 6.6e-119 431.4 351 68.1
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.5e-118 430.3 341 67.7
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.5e-118 430.3 341 67.4
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.3e-118 429.1 351 68.7
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.6e-117 426.8 351 67.5
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 2.8e-117 426.0 341 70.4
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 2.8e-117 426.0 350 67.1
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 8.1e-117 424.5 354 69.2
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.8e-116 423.3 348 67.0
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.4e-116 422.9 351 64.4
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 2.4e-116 422.9 347 67.1
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.1e-116 422.5 354 67.2
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 8.9e-116 421.0 353 67.1
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.2e-115 420.6 351 64.1
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 2.6e-115 419.5 351 67.0
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 4.4e-115 418.7 389 62.7
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 4.4e-115 418.7 321 69.5
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 7.6e-115 417.9 353 68.0
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 9.9e-115 417.5 339 68.1
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.7e-114 416.8 338 66.3
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 2.9e-114 416.0 332 68.1
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 6.4e-114 414.8 354 65.8
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.1e-113 414.1 351 66.1
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.4e-113 413.7 351 65.8
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 4.2e-113 412.1 339 67.6
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.2e-113 412.1 339 67.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.2e-113 412.1 339 67.6
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 5.4e-113 411.8 339 65.2
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 9.3e-113 411.0 332 66.3
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.6e-112 410.2 351 66.1
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.5e-112 409.1 351 65.2
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 6.0e-112 408.3 339 67.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 7.8e-112 407.9 340 65.6
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.0e-111 407.5 355 65.1
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 1.0e-111 407.5 297 75.4
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.3e-111 407.1 339 64.6
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 1.3e-111 407.1 353 64.6
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 1.7e-111 406.8 340 65.3
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 2.3e-111 406.4 339 64.6
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.3e-111 406.4 352 64.5
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.3e-111 406.4 335 68.4
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.0e-111 406.0 340 65.0
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 3.9e-111 405.6 348 65.2
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 5.1e-111 405.2 342 66.7
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 6.6e-111 404.8 341 63.3
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.1e-110 404.1 356 65.4
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.5e-110 403.7 350 64.3
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.5e-110 403.7 340 65.3
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 7.3e-110 401.4 370 63.5
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 7.3e-110 401.4 342 64.6
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.6e-109 400.2 351 65.8
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 2.8e-109 399.4 350 63.7
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.6e-109 399.1 352 64.2
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 4.8e-109 398.7 353 65.2
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.8e-108 396.7 350 63.4
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.4e-108 396.4 339 66.4
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 3.4e-107 392.5 354 64.1
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 1.3e-106 390.6 337 65.0
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 3.8e-106 389.0 372 60.2
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 3.8e-106 389.0 347 62.8
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.4e-105 386.3 351 63.5
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 4.2e-105 385.6 318 67.0
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.2e-104 384.0 347 62.8
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.1e-103 378.6 341 63.0
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 6.6e-103 378.3 351 61.8
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 6.6e-103 378.3 292 69.9
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 4.3e-102 375.6 329 60.2
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 6.2e-101 371.7 302 69.5
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.4e-100 370.5 318 67.3
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 4.0e-100 369.0 343 58.6
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 9.0e-100 367.9 299 67.9
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.0e-99 366.7 333 62.8
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 4.9e-98 362.1 283 70.3
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 6.4e-98 361.7 289 67.5
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.1e-97 360.9 346 59.8
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 6.0e-96 355.1 383 57.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 7.4e-94 348.2 321 62.0
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 4.8e-93 345.5 331 60.4
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 6.2e-93 345.1 357 60.2
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 2.9e-90 336.3 309 65.0
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 3.8e-90 335.9 271 69.7
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 9.3e-89 331.3 280 68.2
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.6e-88 330.5 339 56.9
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.0e-87 327.8 352 56.8
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.3e-87 327.4 343 53.9
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.3e-85 320.9 394 50.8
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.3e-85 320.9 394 53.6
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.8e-84 317.0 234 75.2
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 3.8e-82 309.3 343 51.9
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 4.2e-81 305.8 229 71.2
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.6e-80 303.9 433 45.7
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.9e-79 299.3 248 69.0
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.3e-78 295.8 399 49.1
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 7.7e-75 285.0 234 65.8
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 1.0e-74 284.6 252 65.5
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 1.3e-74 284.3 248 63.3
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 1.0e-71 274.6 246 63.8
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 5.1e-71 272.3 277 59.2
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.0e-66 258.1 314 49.4
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.1e-64 250.4 336 44.3
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 8.8e-63 245.0 324 43.5
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 4.4e-62 242.7 182 72.5
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.0e-58 231.5 331 41.4
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 6.1e-56 222.2 238 52.5
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 8.8e-55 218.4 223 53.8
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 2.6e-54 216.9 204 56.4
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.0e-47 194.9 141 78.0
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 3.0e-47 193.4 206 54.4
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 7.0e-44 182.2 145 62.8
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.5e-43 179.5 149 63.1
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 1.6e-40 171.0 167 62.3
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.9e-34 150.2 129 64.3
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 5.6e-33 146.0 108 74.1
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.0e-32 142.1 95 77.9
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 8.3e-29 132.1 327 31.8
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.7e-26 124.4 127 63.0
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.3e-21 108.2 160 46.2
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.7e-21 107.8 84 69.0
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.6e-19 101.3 229 31.4
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 1.5e-17 94.7 106 55.7
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 1.3e-13 81.6 52 80.8
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 2.9e-13 80.5 52 76.9
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 2.1e-11 74.3 50 74.0
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 1.0e-10 72.0 93 47.3
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 1.7e-10 71.2 93 41.9
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 3.0e-10 70.5 76 51.3
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 5.1e-10 69.7 53 71.7
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 4.0e-07 60.1 74 48.6


User provided reference genes

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