Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1788.1 870 100.0
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1461.4 868 80.8
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1454.9 868 80.2
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1414.8 873 78.4
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1400.2 864 77.5
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1379.8 870 76.2
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1373.6 869 75.8
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1373.2 864 76.3
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1371.7 869 75.5
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1370.9 870 75.9
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1367.4 869 75.5
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1366.3 869 75.5
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1363.2 865 75.3
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1359.0 864 75.6
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1352.0 867 74.4
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1352.0 870 74.4
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1343.9 866 73.1
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1340.9 866 73.6
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1333.5 867 73.6
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1331.2 866 73.1
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1328.5 868 72.1
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1327.4 870 73.1
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1325.1 864 73.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1323.5 877 72.6
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1323.1 880 71.6
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1322.4 874 72.5
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1319.7 866 72.6
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1318.1 866 72.6
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1317.8 871 72.7
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1316.6 867 73.2
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1316.6 874 72.5
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1316.6 870 72.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1315.8 871 72.7
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1315.8 866 72.9
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1315.1 861 72.5
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1314.3 864 73.6
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1311.6 869 72.3
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1311.6 865 72.1
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1311.2 867 72.9
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1311.2 863 72.0
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1310.4 864 73.4
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1307.7 864 72.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1307.4 867 71.4
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1306.2 868 72.7
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1304.7 858 72.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1302.7 867 71.2
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1300.8 864 71.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1295.8 867 71.3
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1295.0 864 72.0
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1293.9 864 70.7
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1292.7 865 72.6
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1291.9 873 71.4
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1291.6 862 71.1
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1291.2 866 71.0
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1290.0 864 70.6
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1287.3 865 72.3
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1287.3 864 70.7
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1286.9 889 69.5
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1286.6 865 71.1
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1283.9 863 70.6
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1276.5 870 70.3
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1275.0 865 71.0
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1274.6 865 71.1
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1273.8 864 70.7
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1273.5 869 71.1
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1273.1 864 70.6
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1273.1 876 69.4
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1272.7 863 70.8
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1271.1 870 70.3
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1271.1 864 70.5
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1270.0 864 70.4
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 866 70.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1268.4 864 70.1
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1268.1 864 70.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1266.9 870 70.5
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1266.5 866 70.6
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1266.5 874 69.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 873 70.6
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1260.4 871 68.5
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 863 70.6
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 864 70.4
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1255.7 863 70.8
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1253.0 882 68.3
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 874 68.4
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1247.6 861 70.0
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 863 69.2
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 863 68.8
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 827 70.9
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1202.6 866 66.4
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1156.4 744 75.4
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1152.9 852 65.3
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1105.1 863 61.8
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 0.0e+00 1103.2 868 64.6
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 0.0e+00 1097.0 647 80.2
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 0.0e+00 1091.6 691 74.1
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 0.0e+00 1087.4 857 63.1
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.1e-308 1063.1 692 73.7
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 6.1e-299 1030.8 863 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 3.8e-293 1011.5 867 57.0
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 3.5e-286 988.4 861 56.0
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.8e-279 966.1 868 53.2
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.0e-208 731.1 768 48.4
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.4e-165 587.8 481 61.3
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.0e-165 586.6 388 71.6
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.4e-148 530.0 460 57.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.7e-128 464.5 364 62.6
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 5.1e-104 383.3 307 63.8
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 3.7e-70 270.8 204 63.2
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 4.1e-69 267.3 168 73.8
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 8.3e-54 216.5 175 62.9
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.3e-50 204.5 173 57.8
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 5.4e-45 187.2 196 53.1
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.1e-40 171.4 216 43.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 8.0e-33 146.7 145 52.4
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.4e-32 146.0 118 63.6
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.4e-31 141.0 85 77.6
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 7.3e-26 123.6 90 66.7
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 3.1e-24 118.2 87 67.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.0e-23 115.5 69 76.8
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.6e-23 115.2 106 54.7
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-20 106.3 81 61.7
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.2e-14 85.5 197 27.9
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.1e-12 79.0 326 24.5
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 2.1e-12 79.0 94 50.0
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 4.6e-12 77.8 250 25.2
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.0e-11 76.6 306 24.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.3e-11 76.3 286 24.1
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-10 73.2 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.3e-10 71.6 312 24.4
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 5.6e-10 70.9 88 51.1
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.8e-09 67.8 298 23.8
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.2e-09 67.4 233 23.6
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 8.1e-09 67.0 324 22.5
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.1e-08 66.6 312 24.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.1e-08 66.6 327 23.5
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 2.4e-08 65.5 302 24.5
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 4.4e-07 61.2 207 27.1
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-07 60.8 119 31.9
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.6e-07 60.5 32 81.2
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 9.9e-07 60.1 298 22.5
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 1.7e-06 59.3 200 28.0
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.9e-06 58.5 215 27.4
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.9e-06 57.8 216 22.7
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.4e-06 57.0 111 27.9


User provided reference genes

Program Settings