Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 8.9e-107 390.2 186 100.0
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 6.0e-95 350.9 186 86.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.0e-94 348.6 185 85.4
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 3.9e-94 348.2 186 84.9
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 5.1e-94 347.8 184 84.2
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.1e-93 346.7 186 84.9
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 4.0e-91 338.2 185 80.0
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 5.3e-91 337.8 184 81.0
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 5.3e-91 337.8 184 81.5
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 6.9e-91 337.4 184 79.9
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 6.9e-91 337.4 184 79.9
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 2.6e-90 335.5 186 80.1
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 3.4e-90 335.1 199 77.9
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 3.4e-90 335.1 182 80.8
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 5.8e-90 334.3 184 81.0
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 5.8e-90 334.3 180 81.1
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.9e-88 329.3 185 78.9
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 2.4e-88 328.9 187 79.1
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 5.4e-88 327.8 184 78.3
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.6e-87 326.2 203 75.4
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.1e-87 325.9 186 79.0
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.1e-87 325.9 186 79.0
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.5e-87 325.1 184 79.3
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 3.5e-87 325.1 184 79.9
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 7.9e-87 323.9 184 80.4
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.0e-86 323.6 184 79.3
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 2.3e-86 322.4 184 78.8
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 2.3e-86 322.4 184 78.8
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.9e-86 321.6 181 81.2
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 3.9e-86 321.6 184 76.1
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 5.1e-86 321.2 184 76.6
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 5.1e-86 321.2 183 77.0
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.1e-85 320.1 184 78.3
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 1.1e-85 320.1 177 79.1
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 1.5e-85 319.7 185 78.4
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.9e-85 319.3 182 77.5
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.9e-85 319.3 178 80.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.5e-85 318.9 186 76.9
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 2.5e-85 318.9 184 77.2
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.5e-85 318.9 183 78.1
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.5e-85 318.9 187 78.6
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.5e-85 318.9 187 78.6
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 3.3e-85 318.5 182 76.9
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.3e-85 318.5 179 81.6
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.3e-85 318.5 183 77.6
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.3e-85 318.5 183 77.6
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 5.6e-85 317.8 184 76.1
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 7.4e-85 317.4 183 76.5
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 7.4e-85 317.4 182 76.9
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 7.4e-85 317.4 182 76.4
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.6e-85 317.0 183 77.6
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 9.6e-85 317.0 183 77.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 9.6e-85 317.0 186 75.3
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 1.3e-84 316.6 182 75.8
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.6e-84 316.2 183 77.6
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.6e-84 316.2 182 75.8
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.1e-84 315.8 173 82.7
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.8e-84 315.5 182 76.9
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.8e-84 315.5 183 77.0
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.8e-84 315.5 177 78.5
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 3.7e-84 315.1 182 76.4
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 6.2e-84 314.3 185 76.8
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 8.1e-84 313.9 177 78.5
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 8.1e-84 313.9 177 78.0
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 8.1e-84 313.9 177 78.0
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 1.1e-83 313.5 183 76.5
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.1e-83 313.5 183 76.5
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.8e-83 312.8 183 76.5
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 2.4e-83 312.4 181 76.2
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 3.1e-83 312.0 184 74.5
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 3.1e-83 312.0 179 79.3
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 4.0e-83 311.6 176 76.7
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 4.0e-83 311.6 179 78.2
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 4.0e-83 311.6 184 73.9
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 6.9e-83 310.8 184 75.5
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 6.9e-83 310.8 173 82.1
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 9.0e-83 310.5 183 75.4
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.2e-82 310.1 184 74.5
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.2e-82 310.1 184 74.5
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.5e-82 309.7 197 71.6
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.0e-82 309.3 183 76.0
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.6e-82 308.9 181 76.2
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 3.4e-82 308.5 179 77.1
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.3e-81 306.6 181 75.7
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.4e-80 303.1 204 69.1
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 1.9e-80 302.8 182 73.6
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 4.2e-80 301.6 215 65.6
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 9.3e-80 300.4 186 73.7
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 2.7e-79 298.9 158 85.4
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 4.6e-79 298.1 185 70.8
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 4.6e-79 298.1 185 70.8
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 7.9e-79 297.4 168 78.0
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.0e-78 297.0 154 87.0
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.5e-77 292.4 225 62.2
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.3e-77 292.0 225 61.8
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 9.6e-77 290.4 154 85.1
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.4e-75 285.8 183 70.5
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.1e-75 285.4 176 72.7
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 5.3e-75 284.6 178 71.3
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.0e-74 282.7 162 77.8
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.8e-73 278.5 175 72.0
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.8e-73 278.5 175 72.0
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 3.2e-72 275.4 181 70.2
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 2.1e-71 272.7 165 73.9
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 3.5e-71 271.9 191 66.0
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 4.6e-71 271.6 151 80.1
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 7.9e-71 270.8 181 70.2
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 7.9e-71 270.8 151 76.8
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 3.9e-70 268.5 171 74.3
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 8.7e-70 267.3 152 74.3
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 1.1e-69 266.9 186 62.9
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.9e-69 266.2 155 74.8
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.7e-68 261.9 206 60.7
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 7.7e-66 254.2 149 75.2
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 2.2e-65 252.7 147 73.5
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.9e-65 252.3 282 48.6
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.0e-62 243.8 139 74.8
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 1.4e-62 243.4 181 63.0
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 5.7e-61 238.0 182 58.8
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 8.5e-57 224.2 180 57.2
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 9.4e-56 220.7 182 53.8
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 2.1e-55 219.5 182 56.6
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 2.3e-54 216.1 194 59.3
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.2e-52 209.5 184 57.1
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-51 206.8 118 76.3
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 8.8e-46 187.6 206 49.0
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 5.7e-45 184.9 175 45.7
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 5.7e-45 184.9 175 45.7
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 9.7e-45 184.1 185 53.0
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.6e-42 176.8 206 42.2
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 3.5e-42 175.6 123 62.6
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.5e-42 175.3 178 44.4
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.2e-40 169.1 89 83.1
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 4.2e-40 168.7 164 50.0
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.2e-39 167.2 182 41.8
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 2.1e-39 166.4 207 38.2
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-38 163.7 141 56.7
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.8e-36 155.2 88 76.1
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.2e-34 150.6 93 67.7
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 4.5e-34 148.7 142 44.4
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.5e-33 144.4 147 51.0
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.4e-30 137.1 90 66.7
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.5e-13 80.5 74 54.1
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 2.4e-11 73.2 46 67.4
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 7.3e-08 61.6 43 67.4


User provided reference genes

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