Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.5e-272 941.0 477 100.0
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 6.3e-189 664.5 442 78.5
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.1e-156 557.4 428 67.5
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.2e-155 553.9 487 63.9
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.6e-155 553.5 443 66.6
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.0e-154 550.8 460 65.4
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.1e-153 547.4 475 64.2
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.3e-153 545.8 469 64.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.1e-152 543.1 469 63.3
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 6.2e-152 541.6 476 62.0
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 1.8e-151 540.0 480 61.0
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.3e-151 539.7 482 62.7
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 5.2e-151 538.5 478 61.7
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.6e-150 536.2 398 69.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 9.8e-150 534.3 470 62.3
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.3e-149 533.9 475 61.7
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.2e-149 533.1 501 59.3
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.9e-149 532.7 494 59.7
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 2.9e-149 532.7 504 60.7
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 3.7e-149 532.3 440 64.5
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 3.7e-149 532.3 495 60.8
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 4.9e-149 531.9 468 62.2
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.4e-148 530.4 462 61.3
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 5.4e-148 528.5 441 63.5
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 9.2e-148 527.7 487 60.2
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.0e-147 526.6 477 60.8
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 2.7e-147 526.2 443 63.9
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 3.5e-147 525.8 403 68.0
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.0e-146 524.2 480 61.0
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 2.3e-146 523.1 383 69.2
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 2.3e-146 523.1 459 61.9
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 5.0e-146 521.9 443 63.4
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 5.0e-146 521.9 473 60.5
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 5.0e-146 521.9 428 64.5
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 5.0e-146 521.9 488 59.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 5.0e-146 521.9 476 61.8
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 5.0e-146 521.9 428 63.8
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 6.6e-146 521.5 490 60.2
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.5e-145 520.4 489 60.3
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.5e-145 520.4 420 65.0
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.9e-145 520.0 469 61.4
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.9e-145 520.0 451 62.7
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 2.5e-145 519.6 383 69.5
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.3e-145 519.2 426 63.6
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 4.3e-145 518.8 467 60.4
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 4.3e-145 518.8 450 62.4
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 5.6e-145 518.5 443 62.8
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.2e-144 517.3 494 59.5
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.1e-144 516.5 462 60.6
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 2.8e-144 516.2 421 66.3
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 3.6e-144 515.8 483 60.7
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 8.1e-144 514.6 435 63.0
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 8.1e-144 514.6 435 63.0
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 8.1e-144 514.6 468 60.9
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.1e-143 514.2 454 61.2
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.8e-143 513.5 465 60.2
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 3.1e-143 512.7 406 65.8
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 3.1e-143 512.7 462 60.0
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 3.1e-143 512.7 455 61.3
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 5.2e-143 511.9 435 62.1
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 5.2e-143 511.9 435 62.1
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 6.8e-143 511.5 452 60.8
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.2e-142 510.8 474 59.9
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.2e-142 510.8 459 61.2
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.5e-142 510.4 419 64.2
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.5e-142 510.4 419 64.2
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 5.8e-142 508.4 419 64.0
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 7.5e-142 508.1 394 67.0
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 7.5e-142 508.1 441 62.8
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 9.8e-142 507.7 438 62.6
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.3e-141 507.3 428 62.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.3e-141 507.3 426 63.6
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.3e-141 507.3 426 63.6
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.3e-141 507.3 405 65.7
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.7e-141 506.9 425 64.0
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.2e-141 506.5 438 63.0
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 2.2e-141 506.5 433 62.1
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.9e-141 506.1 440 61.8
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 2.9e-141 506.1 448 62.1
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 4.9e-141 505.4 463 59.6
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.4e-141 505.0 461 61.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.1e-140 504.2 382 69.9
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.1e-140 504.2 485 58.6
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 9.2e-140 501.1 394 67.3
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 9.2e-140 501.1 416 63.2
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.2e-140 501.1 523 53.9
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-139 500.7 461 60.7
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 6.0e-139 498.4 485 58.8
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.0e-139 498.4 461 60.1
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.9e-138 495.7 409 63.3
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.9e-138 495.7 383 66.3
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 8.6e-138 494.6 471 59.2
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 2.5e-137 493.0 459 58.4
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 2.5e-137 493.0 404 64.6
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 4.3e-137 492.3 384 66.4
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 5.6e-137 491.9 424 62.3
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.6e-136 490.3 464 59.3
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.1e-136 490.0 482 55.6
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.8e-136 489.6 467 58.0
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.6e-136 489.2 461 60.3
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 3.6e-136 489.2 404 63.9
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 6.2e-136 488.4 464 59.1
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 1.4e-135 487.3 447 60.6
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.4e-135 487.3 465 58.3
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 6.8e-135 485.0 598 49.7
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 8.9e-135 484.6 467 58.2
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 2.6e-134 483.0 384 64.6
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.4e-134 482.6 475 58.1
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.9e-133 479.6 483 55.1
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.2e-132 474.6 503 54.5
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.7e-131 473.0 392 63.3
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 6.0e-131 471.9 441 58.7
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 7.8e-131 471.5 441 58.5
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 7.8e-131 471.5 405 61.7
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 5.1e-130 468.8 477 58.3
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 8.6e-130 468.0 532 52.8
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.5e-129 466.5 380 62.6
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.5e-129 466.5 466 54.1
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.6e-128 462.6 366 65.6
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 8.1e-128 461.5 344 66.3
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 5.8e-126 455.3 340 63.5
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 9.9e-126 454.5 344 64.8
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 6.4e-125 451.8 464 54.1
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 8.4e-125 451.4 489 54.4
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.4e-124 449.9 322 70.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 4.6e-123 445.7 336 67.6
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 7.8e-123 444.9 378 62.2
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.8e-120 436.4 541 50.1
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 8.1e-120 434.9 452 52.7
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 2.0e-118 430.3 447 53.0
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.3e-117 427.6 401 54.9
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 8.4e-117 424.9 484 51.2
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.2e-116 422.9 359 60.4
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.2e-116 422.9 402 57.7
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 7.9e-115 418.3 386 59.6
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 1.9e-113 413.7 403 59.1
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.5e-113 413.3 335 63.3
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 5.3e-111 405.6 443 50.1
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.9e-109 399.8 339 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.8e-109 399.4 337 60.2
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.9e-108 397.1 331 61.9
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.1e-107 393.7 309 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.7e-107 393.3 344 57.8
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.0e-106 389.8 445 49.4
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 8.7e-106 388.3 488 50.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.1e-105 387.9 290 69.3
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.4e-100 370.9 450 52.0
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 3.7e-96 356.3 504 47.6
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.2e-93 347.1 210 79.0
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.5e-70 269.6 292 53.8
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.0e-69 268.5 297 54.9
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 8.8e-66 255.4 270 54.8
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 3.3e-65 253.4 327 47.7
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.2e-64 250.8 154 79.9
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.7e-61 241.1 370 40.3
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.6e-51 208.0 216 57.4
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 8.9e-34 149.1 306 32.4
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.6e-30 138.3 409 28.6
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 2.9e-24 117.5 91 59.3
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.2e-22 112.1 115 49.6
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 6.2e-19 99.8 49 91.8
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.0e-18 97.1 97 54.6
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 8.9e-18 95.9 102 52.0
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 8.4e-16 89.4 145 41.4
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 3.9e-13 80.5 173 32.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.6e-11 75.1 63 52.4
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.2e-07 60.5 209 28.2
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 3.5e-06 57.4 40 65.0
Lalb_Chr11g0074511 Lupinus albus HOM05D004042 ORTHO05D004552 7.8e-06 56.2 135 36.3


User provided reference genes

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