Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 6.0e-33 143.7 77 100.0
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 2.0e-28 128.6 77 88.3
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 2.6e-28 128.3 77 87.0
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 5.8e-28 127.1 77 85.7
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 1.3e-27 125.9 76 86.8
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 2.2e-27 125.2 76 84.2
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 3.8e-27 124.4 74 86.5
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 3.8e-27 124.4 77 85.7
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 4.9e-27 124.0 77 85.7
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 4.9e-27 124.0 77 84.4
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 4.9e-27 124.0 77 84.4
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 4.9e-27 124.0 77 84.4
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 4.9e-27 124.0 77 84.4
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 8.4e-27 123.2 76 85.5
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 8.4e-27 123.2 74 85.1
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 8.4e-27 123.2 74 85.1
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 8.4e-27 123.2 74 85.1
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 8.4e-27 123.2 74 85.1
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 8.4e-27 123.2 74 85.1
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 1.1e-26 122.9 77 80.5
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 1.1e-26 122.9 77 84.4
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 1.1e-26 122.9 77 84.4
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 1.1e-26 122.9 73 89.0
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 1.1e-26 122.9 76 82.9
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 1.4e-26 122.5 77 84.4
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 1.9e-26 122.1 76 84.2
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 1.9e-26 122.1 74 85.1
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 2.5e-26 121.7 76 82.9
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 2.5e-26 121.7 77 77.9
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 2.5e-26 121.7 77 83.1
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 2.5e-26 121.7 76 85.5
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 4.2e-26 120.9 76 80.3
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 4.2e-26 120.9 73 84.9
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 4.2e-26 120.9 76 84.2
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 5.5e-26 120.6 73 84.9
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 9.3e-26 119.8 77 80.5
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 9.3e-26 119.8 77 80.5
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 9.3e-26 119.8 77 80.5
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 9.3e-26 119.8 77 81.8
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 9.3e-26 119.8 76 81.6
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 1.2e-25 119.4 77 80.5
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 1.2e-25 119.4 77 80.5
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 1.6e-25 119.0 76 80.3
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 1.6e-25 119.0 77 83.1
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 4.6e-25 117.5 76 77.6
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 4.6e-25 117.5 76 81.6
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 6.0e-25 117.1 76 77.6
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 6.0e-25 117.1 76 78.9
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 6.0e-25 117.1 77 81.8
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 1.0e-24 116.3 77 81.8
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.0e-24 116.3 76 81.6
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.0e-24 116.3 76 81.6
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 1.0e-24 116.3 76 80.3
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 1.0e-24 116.3 76 80.3
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 1.3e-24 115.9 76 78.9
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.3e-24 115.9 74 81.1
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 1.3e-24 115.9 76 78.9
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.8e-24 115.5 79 79.7
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.8e-24 115.5 79 79.7
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 2.3e-24 115.2 76 76.3
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 3.9e-24 114.4 77 76.6
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 5.1e-24 114.0 74 79.7
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 5.1e-24 114.0 77 76.6
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 5.1e-24 114.0 77 76.6
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 6.7e-24 113.6 77 76.6
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 6.7e-24 113.6 76 76.3
MD15G1207400 Malus domestica HOM05D006545 ORTHO05D007985 8.7e-24 113.2 77 74.0
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 1.5e-23 112.5 77 76.6
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 1.5e-23 112.5 76 77.6
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 1.9e-23 112.1 77 75.3
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 1.9e-23 112.1 77 75.3
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 2.5e-23 111.7 74 78.4
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 2.5e-23 111.7 76 75.0
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 3.3e-23 111.3 77 75.3
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 3.3e-23 111.3 77 72.7
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 3.3e-23 111.3 76 73.7
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 4.3e-23 110.9 77 77.9
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 5.7e-23 110.5 76 76.3
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 5.7e-23 110.5 74 74.3
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 5.7e-23 110.5 77 77.9
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 5.7e-23 110.5 77 72.7
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 9.6e-23 109.8 74 74.3
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 1.3e-22 109.4 76 72.4
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 2.8e-22 108.2 77 75.3
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 2.8e-22 108.2 77 72.7
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 2.8e-22 108.2 77 75.3
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 2.8e-22 108.2 77 75.3
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 3.7e-22 107.8 77 75.3
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 3.7e-22 107.8 77 75.3
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 4.8e-22 107.5 76 73.7
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 4.8e-22 107.5 77 75.3
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 8.2e-22 106.7 77 74.0
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 8.2e-22 106.7 77 74.0
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 1.1e-21 106.3 74 74.3
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.4e-21 105.9 75 76.0
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 1.8e-21 105.5 74 73.0
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 3.1e-21 104.8 77 72.7
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 3.1e-21 104.8 76 72.4
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 3.1e-21 104.8 76 72.4
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 5.3e-21 104.0 76 72.4
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 6.9e-21 103.6 76 71.1
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 9.0e-21 103.2 76 71.1
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 1.2e-20 102.8 76 72.4
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.0e-20 102.1 63 87.3
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 5.9e-20 100.5 77 71.4
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 5.9e-20 100.5 77 71.4
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 2.2e-19 98.6 77 71.4
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 2.9e-19 98.2 74 71.6
FAN26G2289 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.9e-19 98.2 63 77.8
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 3.8e-19 97.8 65 78.5
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 8.5e-19 96.7 74 70.3
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 1.9e-18 95.5 63 76.2
HPP92_008778 Vanilla planifolia HOM05D006545 ORTHO05D007985 7.2e-18 93.6 61 77.0
SalBow5G5008 Salvia bowleyana HOM05D006545 ORTHO05D007985 9.3e-18 93.2 62 77.4
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 2.1e-17 92.0 63 77.8
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 3.6e-17 91.3 98 57.1
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 1.0e-16 89.7 102 54.9
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 1.0e-16 89.7 72 63.9
Nitab4.5_0004223g0010 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.0e-16 88.2 60 73.3
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 6.7e-16 87.0 63 74.6
Pp3c11_23220 Physcomitrium patens HOM05D006545 ORTHO05D007985 1.1e-15 86.3 72 63.9
HanXRQChr12g0377121 Helianthus annuus HOM05D006545 ORTHO05D007985 1.9e-15 85.5 56 78.6
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 7.4e-15 83.6 99 53.5
SMO361G0088 Selaginella moellendorffii HOM05D006545 ORTHO05D007985 2.8e-14 81.6 73 54.8
Nitab4.5_0000095g0160 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.7e-14 81.3 71 60.6
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 6.9e-13 77.0 63 69.8
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 1.5e-12 75.9 47 87.2
Lj7C676T8 Lonicera japonica HOM05D006545 ORTHO05D007985 2.1e-09 65.5 37 91.9
A08p19550 Brassica napus HOM05D006545 ORTHO05D007985 6.1e-09 63.9 46 73.9
C01p09620 Brassica napus HOM05D006545 ORTHO05D007985 3.0e-08 61.6 96 46.9
BcaB03g12615 Brassica carinata HOM05D006545 ORTHO05D007985 1.5e-07 59.3 47 61.7
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 4.4e-07 57.8 34 82.4
Actinidia25251 Actinidia chinensis HOM05D006545 ORTHO05D007985 1.3e-06 56.2 46 73.9
Pp3c7_2400 Physcomitrium patens HOM05D006545 ORTHO05D007985 2.8e-06 55.1 125 34.4


User provided reference genes

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