Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G033600 Manihot esculenta HOM05D007811 ORTHO05D009888 0.0e+00 1312.4 658 100.0
Potri.006G144600 Populus trichocarpa HOM05D007811 ORTHO05D009888 1.1e-204 717.2 691 56.2
Sabra06G0113100 Salix brachista HOM05D007811 ORTHO05D009888 2.4e-194 682.9 688 54.4
Sabra06G0114400 Salix brachista HOM05D007811 ORTHO05D009888 2.4e-194 682.9 688 54.4
TWI34G0321 Tripterygium wilfordii HOM05D007811 ORTHO05D009888 2.4e-191 672.9 705 52.9
QL02p062715 Quercus lobata HOM05D007811 ORTHO05D009888 7.6e-185 651.4 703 51.2
Prupe.7G209900 Prunus persica HOM05D007811 ORTHO05D009888 3.2e-175 619.4 695 50.4
Haze_25911 Corylus avellana HOM05D007811 ORTHO05D009888 2.5e-172 609.8 704 49.1
COL.COLO4_18202 Corchorus olitorius HOM05D007811 ORTHO05D009888 8.2e-171 604.7 700 48.4
Gohir.A07G011000 Gossypium hirsutum HOM05D007811 ORTHO05D009888 3.1e-170 602.8 703 48.8
Atru.chr7.1587 Acer truncatum HOM05D007811 ORTHO05D009888 6.9e-170 601.7 620 51.9
MD02G1079300 Malus domestica HOM05D007811 ORTHO05D009888 1.2e-169 600.9 681 50.7
Ciclev10010815m.g Citrus clementina HOM05D007811 ORTHO05D009888 2.0e-169 600.1 703 49.4
Gohir.D07G011150 Gossypium hirsutum HOM05D007811 ORTHO05D009888 1.0e-168 597.8 702 48.3
Gorai.001G011700 Gossypium raimondii HOM05D007811 ORTHO05D009888 5.0e-168 595.5 702 48.1
TAR383G0833 Trochodendron aralioides HOM05D007811 ORTHO05D009888 1.6e-166 590.5 700 47.4
RcHm_v2.0_Chr2g0093321 Rosa chinensis HOM05D007811 ORTHO05D009888 3.3e-164 582.8 687 49.6
FAN19G2727 Fragaria x ananassa HOM05D007811 ORTHO05D009888 5.7e-164 582.0 690 48.7
Duzib168G1142 Durio zibethinus HOM05D007811 ORTHO05D009888 2.8e-163 579.7 694 48.4
FAN26G0113 Fragaria x ananassa HOM05D007811 ORTHO05D009888 1.4e-162 577.4 690 48.3
FvH4_1g07420 Fragaria vesca HOM05D007811 ORTHO05D009888 3.1e-162 576.2 690 48.4
FAN23G0562 Fragaria x ananassa HOM05D007811 ORTHO05D009888 2.9e-160 569.7 690 48.1
Actinidia39718 Actinidia chinensis HOM05D007811 ORTHO05D009888 6.5e-160 568.5 702 46.6
CiPaw.03G216500 Carya illinoinensis HOM05D007811 ORTHO05D009888 1.5e-156 557.4 636 48.7
FAN28G1627 Fragaria x ananassa HOM05D007811 ORTHO05D009888 1.5e-156 557.4 684 48.1
Hma1.2p1_0798F.1_g219820 Hydrangea macrophylla HOM05D007811 ORTHO05D009888 2.2e-155 553.5 690 45.4
Cfa003088 Carpinus fangiana HOM05D007811 ORTHO05D009888 6.3e-155 552.0 705 46.0
CANSAT56G0268 Cannabis sativa HOM05D007811 ORTHO05D009888 3.1e-154 549.7 687 46.3
GSVIVG01015202001 Vitis vinifera HOM05D007811 ORTHO05D009888 3.0e-149 533.1 707 44.7
Hma1.2p1_2664F.1_g326430 Hydrangea macrophylla HOM05D007811 ORTHO05D009888 6.3e-147 525.4 646 45.5
Dinv42318 Davidia involucrata HOM05D007811 ORTHO05D009888 9.4e-143 511.5 563 49.7
Thecc.09G089600 Theobroma cacao HOM05D007811 ORTHO05D009888 1.4e-141 507.7 576 48.3
DCAR_032238 Daucus carota HOM05D007811 ORTHO05D009888 5.2e-141 505.8 700 42.6
THA.LOC104817755 Tarenaya hassleriana HOM05D007811 ORTHO05D009888 2.2e-136 490.3 685 41.5
FAN26G2623 Fragaria x ananassa HOM05D007811 ORTHO05D009888 3.8e-136 489.6 612 46.6
HanXRQChr12g0354871 Helianthus annuus HOM05D007811 ORTHO05D009888 5.5e-135 485.7 670 42.4
PGSC0003DMG400009724 Solanum tuberosum HOM05D007811 ORTHO05D009888 9.4e-135 485.0 694 40.6
PGR102G3061 Punica granatum HOM05D007811 ORTHO05D009888 2.7e-134 483.4 695 42.0
CANSAT56G0922 Cannabis sativa HOM05D007811 ORTHO05D009888 3.6e-134 483.0 687 42.8
Sopen07g018370 Solanum pennellii HOM05D007811 ORTHO05D009888 4.7e-134 482.6 693 40.4
Solyc07g038100.3 Solanum lycopersicum HOM05D007811 ORTHO05D009888 2.2e-131 473.8 694 40.2
Aqoxy7G04046 Aquilegia oxysepala HOM05D007811 ORTHO05D009888 2.0e-129 467.2 695 41.6
Lsat_1_v5_gn_5_142361 Lactuca sativa HOM05D007811 ORTHO05D009888 1.1e-127 461.5 658 41.9
BcaB02g08177 Brassica carinata HOM05D007811 ORTHO05D009888 4.7e-126 456.1 664 41.3
SalBow6G0727 Salvia bowleyana HOM05D007811 ORTHO05D009888 3.4e-124 449.9 700 39.1
Thhalv10006501m.g Eutrema salsugineum HOM05D007811 ORTHO05D009888 9.8e-124 448.4 680 40.7
PSO210G1027 Papaver somniferum HOM05D007811 ORTHO05D009888 1.3e-123 448.0 686 38.6
CARHR170630 Cardamine hirsuta HOM05D007811 ORTHO05D009888 2.8e-123 446.8 696 39.1
BraA04t15894Z Brassica rapa HOM05D007811 ORTHO05D009888 3.7e-123 446.4 668 40.3
Nitab4.5_0004978g0030 Nicotiana tabacum HOM05D007811 ORTHO05D009888 3.7e-123 446.4 694 39.2
MSTRG.19514 Avicennia marina HOM05D007811 ORTHO05D009888 1.1e-122 444.9 715 38.5
PSO210G6552 Papaver somniferum HOM05D007811 ORTHO05D009888 5.4e-122 442.6 684 38.5
Nitab4.5_0005634g0040 Nicotiana tabacum HOM05D007811 ORTHO05D009888 7.0e-122 442.2 693 38.5
BcaC02g10146 Brassica carinata HOM05D007811 ORTHO05D009888 1.6e-121 441.0 664 41.0
BolC4t24783H Brassica oleracea HOM05D007811 ORTHO05D009888 2.7e-121 440.3 664 40.8
AL5G42530 Arabidopsis lyrata HOM05D007811 ORTHO05D009888 7.7e-121 438.7 683 39.1
AT3G60310 Arabidopsis thaliana HOM05D007811 ORTHO05D009888 7.7e-121 438.7 684 39.6
Sc18g0001990 Simmondsia chinensis HOM05D007811 ORTHO05D009888 1.0e-120 438.3 693 40.0
C04p32330 Brassica napus HOM05D007811 ORTHO05D009888 1.9e-119 434.1 664 40.4
A04p01700 Brassica napus HOM05D007811 ORTHO05D009888 9.5e-119 431.8 691 38.8
Carub.0005s2705 Capsella rubella HOM05D007811 ORTHO05D009888 7.5e-116 422.2 619 41.2
SGA_v2.0_scaffold10G05228 Striga asiatica HOM05D007811 ORTHO05D009888 2.9e-115 420.2 697 37.4
Peaxi162Scf01121g00111 Petunia axillaris HOM05D007811 ORTHO05D009888 4.1e-114 416.4 682 38.1
ECA234G0321 Erigeron canadensis HOM05D007811 ORTHO05D009888 3.5e-113 413.3 690 37.8
Migut.J00617 Erythranthe guttata HOM05D007811 ORTHO05D009888 1.7e-99 367.9 566 37.3
Nn6g35473 Nelumbo nucifera HOM05D007811 ORTHO05D009888 5.6e-95 352.8 704 35.2
Cpa.g.sc93.35 Carica papaya HOM05D007811 ORTHO05D009888 6.8e-93 345.9 435 43.9
HPP92_003971 Vanilla planifolia HOM05D007811 ORTHO05D009888 3.2e-90 337.0 706 33.7
Cc00_g27490 Coffea canephora HOM05D007811 ORTHO05D009888 1.0e-88 332.0 412 45.6
ATR0749G017 Amborella trichopoda HOM05D007811 ORTHO05D009888 2.0e-84 317.8 752 31.2
Zm00001eb376990 Zea mays HOM05D007811 ORTHO05D009888 5.3e-77 293.1 665 33.1
Oeu042653.6 Olea europaea HOM05D007811 ORTHO05D009888 6.7e-72 276.2 703 32.4
Eucgr.C03899 Eucalyptus grandis HOM05D007811 ORTHO05D009888 1.1e-71 275.4 428 38.8
Cpa.g.sc93.36 Carica papaya HOM05D007811 ORTHO05D009888 5.6e-71 273.1 269 54.3
MBI01_g21120_MAGBIO Magnolia biondii HOM05D007811 ORTHO05D009888 6.0e-57 226.5 442 33.9
DCAR_028591 Daucus carota HOM05D007811 ORTHO05D009888 1.1e-47 195.7 497 30.6
SEGI_03446 Sequoiadendron giganteum HOM05D007811 ORTHO05D009888 3.6e-41 174.1 483 29.2
CDE04G1243 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 1.1e-34 152.5 434 29.0
CAN.G720.2 Capsicum annuum HOM05D007811 ORTHO05D009888 6.3e-30 136.7 210 34.3
Cfa003090 Carpinus fangiana HOM05D007811 ORTHO05D009888 7.2e-26 123.2 160 45.6
CAN.G720.1 Capsicum annuum HOM05D007811 ORTHO05D009888 1.7e-19 102.1 118 45.8
SEGI_10589 Sequoiadendron giganteum HOM05D007811 ORTHO05D009888 2.2e-19 101.7 589 22.6
Haze_25909 Corylus avellana HOM05D007811 ORTHO05D009888 2.1e-17 95.1 142 40.1
TAR626G1045 Trochodendron aralioides HOM05D000238 ORTHO05D011431 4.9e-06 57.4 49 53.1


User provided reference genes

Program Settings