Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 7.9e-54 213.4 98 100.0
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 2.4e-50 201.8 97 90.7
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 9.0e-50 199.9 98 89.8
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 1.5e-49 199.1 98 88.8
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 7.6e-49 196.8 98 86.7
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 2.9e-48 194.9 98 85.7
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 5.0e-48 194.1 98 85.7
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 6.5e-48 193.7 98 86.7
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 8.4e-48 193.4 98 85.7
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 1.1e-47 193.0 98 85.7
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 2.5e-47 191.8 98 84.7
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 3.2e-47 191.4 98 84.7
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 3.2e-47 191.4 98 84.7
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 7.1e-47 190.3 90 91.1
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 7.1e-47 190.3 90 91.1
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 7.1e-47 190.3 90 91.1
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 7.1e-47 190.3 98 81.6
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 7.1e-47 190.3 98 81.6
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 9.3e-47 189.9 96 84.4
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 1.6e-46 189.1 98 84.7
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 1.3e-45 186.0 98 82.7
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 2.3e-45 185.3 98 80.6
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 3.9e-45 184.5 91 84.6
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 5.1e-45 184.1 91 86.8
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 1.1e-44 183.0 91 83.5
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 1.1e-44 183.0 98 77.6
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 1.5e-44 182.6 91 85.7
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 2.5e-44 181.8 90 87.8
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 2.5e-44 181.8 91 85.7
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 2.5e-44 181.8 94 80.9
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 3.3e-44 181.4 94 84.0
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 4.3e-44 181.0 98 79.6
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 4.3e-44 181.0 98 79.6
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 4.3e-44 181.0 101 78.2
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 5.7e-44 180.6 98 76.5
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 5.7e-44 180.6 98 82.7
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 7.4e-44 180.3 95 77.9
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 7.4e-44 180.3 91 83.5
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 9.7e-44 179.9 98 81.6
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 9.7e-44 179.9 91 83.5
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 1.3e-43 179.5 91 83.5
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 1.3e-43 179.5 98 77.6
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 1.3e-43 179.5 98 81.6
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.3e-43 179.5 98 81.6
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 2.2e-43 178.7 98 74.5
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 2.8e-43 178.3 94 78.7
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 3.7e-43 177.9 90 85.6
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 3.7e-43 177.9 98 80.6
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 3.7e-43 177.9 98 78.6
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 4.8e-43 177.6 94 79.8
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 4.8e-43 177.6 94 79.8
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 4.8e-43 177.6 98 78.6
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 6.3e-43 177.2 98 81.6
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 6.3e-43 177.2 94 77.7
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 6.3e-43 177.2 94 77.7
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 6.3e-43 177.2 94 77.7
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 6.3e-43 177.2 94 77.7
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 8.2e-43 176.8 98 77.6
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 8.2e-43 176.8 98 75.5
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 8.2e-43 176.8 91 81.3
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 1.1e-42 176.4 91 83.5
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 1.1e-42 176.4 98 75.5
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 1.1e-42 176.4 98 77.6
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 1.4e-42 176.0 91 80.2
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 1.4e-42 176.0 97 76.3
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 2.4e-42 175.3 94 76.6
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 3.1e-42 174.9 100 75.0
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 3.1e-42 174.9 100 75.0
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 5.3e-42 174.1 96 75.0
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 6.9e-42 173.7 90 83.3
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 6.9e-42 173.7 90 83.3
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 6.9e-42 173.7 91 78.0
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 9.0e-42 173.3 91 81.3
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 9.0e-42 173.3 91 79.1
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 1.2e-41 172.9 98 74.5
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 1.5e-41 172.6 91 78.0
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 2.0e-41 172.2 91 76.9
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 2.0e-41 172.2 91 74.7
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.0e-41 172.2 94 76.6
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 2.6e-41 171.8 88 83.0
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 2.6e-41 171.8 91 76.9
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 3.4e-41 171.4 91 79.1
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 4.5e-41 171.0 90 78.9
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 5.9e-41 170.6 95 75.8
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 5.9e-41 170.6 94 75.5
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 5.9e-41 170.6 94 75.5
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 7.7e-41 170.2 91 75.8
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 1.0e-40 169.9 91 78.0
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 1.0e-40 169.9 91 80.2
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 1.3e-40 169.5 90 78.9
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 1.7e-40 169.1 111 69.4
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 2.2e-40 168.7 94 75.5
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 2.9e-40 168.3 95 76.8
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 3.8e-40 167.9 91 80.2
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 3.8e-40 167.9 91 75.8
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 6.5e-40 167.2 91 79.1
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 2.5e-39 165.2 98 72.4
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.2e-38 162.9 89 75.3
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 1.2e-38 162.9 91 74.7
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 1.6e-38 162.5 95 75.8
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 2.1e-38 162.2 113 64.6
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 2.7e-38 161.8 98 70.4
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 6.1e-38 160.6 78 87.2
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 2.3e-37 158.7 94 73.4
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 2.5e-36 155.2 93 66.7
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 4.3e-36 154.5 93 68.8
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 4.3e-36 154.5 94 70.2
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 5.7e-36 154.1 93 68.8
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 7.4e-36 153.7 93 68.8
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 9.7e-36 153.3 91 69.2
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 9.7e-36 153.3 91 69.2
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 9.7e-36 153.3 91 69.2
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 9.7e-36 153.3 91 70.3
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 2.8e-35 151.8 91 68.1
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 2.8e-35 151.8 91 68.1
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 2.8e-35 151.8 91 68.1
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 2.8e-35 151.8 91 68.1
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 2.8e-35 151.8 91 68.1
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 3.7e-35 151.4 91 69.2
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 4.8e-35 151.0 82 75.6
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 4.8e-35 151.0 91 69.2
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 6.3e-35 150.6 91 70.3
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.2e-33 146.4 105 61.9
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 8.5e-32 140.2 78 76.9
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.5e-31 138.7 80 76.2
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 3.6e-30 134.8 100 59.0
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 3.0e-29 131.7 74 73.0
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 2.6e-28 128.6 74 77.0
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 4.4e-28 127.9 65 81.5
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 2.8e-27 125.2 67 76.1
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 1.7e-24 115.9 207 32.4
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 2.5e-23 112.1 61 82.0
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 7.2e-23 110.5 74 66.2
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 7.2e-23 110.5 61 75.4
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 1.5e-15 86.3 68 51.5
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 4.2e-15 84.7 68 51.5
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 1.0e-13 80.1 43 74.4
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 6.8e-13 77.4 61 54.1
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 1.9e-07 59.3 57 42.1


User provided reference genes

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