Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 6.6e-280 966.8 527 100.0
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 3.1e-261 904.8 535 93.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.2e-153 547.4 518 56.0
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 2.2e-150 536.6 520 53.8
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.3e-144 516.5 535 52.0
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 4.0e-144 515.8 541 51.8
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-143 513.1 273 96.3
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-143 513.1 273 96.3
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 9.8e-143 511.1 273 96.0
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 6.4e-142 508.4 517 54.5
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 9.2e-141 504.6 530 52.5
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.2e-140 504.2 520 54.0
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.1e-140 503.4 521 50.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.1e-133 481.1 418 58.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.3e-131 474.2 477 54.1
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.6e-129 467.2 525 48.4
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.1e-129 466.8 528 46.8
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.8e-126 456.1 530 47.7
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.8e-126 456.1 530 47.7
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.4e-125 453.4 531 46.3
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 9.3e-125 451.4 521 46.4
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 3.0e-123 446.4 526 46.6
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 5.1e-123 445.7 517 46.4
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.9e-122 443.7 478 52.1
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-121 441.0 478 51.7
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.3e-121 441.0 527 46.1
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 4.8e-121 439.1 536 45.1
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.4e-120 436.8 526 46.2
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.9e-117 427.2 453 49.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 2.1e-116 423.7 458 49.6
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.6e-116 422.5 453 48.8
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 6.6e-115 418.7 525 45.5
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.9e-114 417.2 476 47.3
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.6e-113 414.1 530 45.1
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.2e-113 412.1 525 43.8
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 8.1e-113 411.8 525 44.0
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.4e-112 411.0 523 44.0
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.8e-112 410.6 445 48.3
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 5.3e-112 409.1 525 45.7
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 9.0e-112 408.3 524 45.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.6e-111 406.8 527 42.5
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.6e-111 406.8 539 42.9
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 7.1e-109 398.7 527 41.9
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.2e-108 397.9 551 41.7
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.1e-108 397.1 477 48.4
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.1e-108 397.1 523 44.6
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-107 394.4 465 45.4
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 8.7e-107 391.7 524 43.1
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.9e-106 390.6 525 44.0
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 5.8e-103 379.0 522 39.1
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.7e-102 377.5 537 39.7
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 6.5e-102 375.6 533 41.7
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.1e-101 374.8 530 40.6
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.4e-101 374.4 486 42.8
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 7.1e-101 372.1 529 42.0
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 6.0e-100 369.0 541 42.5
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 3.0e-99 366.7 532 40.6
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 8.7e-99 365.2 526 39.4
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 9.6e-98 361.7 516 41.5
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 5.0e-94 349.4 523 40.3
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.1e-92 344.0 525 37.9
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.3e-89 334.7 488 41.8
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.1e-88 330.1 502 38.2
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 4.1e-88 329.7 520 38.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.2e-86 323.9 522 37.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.5e-82 310.5 535 33.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 4.1e-80 303.1 526 35.6
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.6e-79 300.4 526 34.0
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 8.5e-78 295.4 488 37.1
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.1e-77 295.0 417 41.2
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-77 295.0 527 37.0
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.4e-77 294.7 494 35.6
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.9e-77 294.3 531 35.0
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.5e-77 292.7 487 37.0
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.2e-76 291.6 470 38.1
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.6e-76 291.2 489 36.8
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.4e-75 288.1 492 34.8
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.8e-75 287.7 505 36.0
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.3e-75 287.3 498 34.5
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.9e-75 286.6 494 34.6
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 2.0e-74 284.3 479 36.5
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.3e-73 281.6 484 35.7
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.1e-72 278.5 524 33.2
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 7.0e-72 275.8 464 36.0
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.7e-71 272.3 472 35.6
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.0e-70 269.6 521 34.4
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 8.5e-70 268.9 535 33.8
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.1e-69 268.5 514 34.2
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.9e-69 267.7 482 35.1
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.9e-69 267.7 528 32.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 3.2e-69 266.9 516 33.7
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 5.5e-69 266.2 511 33.5
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.5e-69 266.2 417 36.9
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.3e-67 260.8 497 33.2
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 6.7e-67 259.2 276 48.6
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-65 255.0 542 31.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.4e-64 251.5 496 34.1
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.8e-64 251.1 391 36.6
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.8e-64 251.1 474 32.9
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.1e-64 250.4 473 33.4
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.3e-64 249.6 379 37.5
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.6e-63 247.3 389 36.8
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 2.6e-63 247.3 445 34.6
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 5.9e-63 246.1 392 37.5
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.0e-62 243.0 510 31.8
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.5e-62 242.7 506 31.8
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.5e-62 242.7 506 31.8
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.1e-61 241.9 498 31.7
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.1e-61 241.9 550 32.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 2.7e-60 237.3 488 30.5
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 3.6e-60 236.9 487 32.9
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.1e-60 236.1 472 32.0
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.0e-59 235.3 551 29.4
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 8.8e-59 232.3 232 49.6
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.5e-58 231.5 511 33.3
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.0e-58 231.1 476 33.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 2.0e-58 231.1 398 34.2
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 3.4e-58 230.3 485 31.5
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 4.8e-57 226.5 484 30.6
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.8e-57 226.5 256 48.8
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 6.3e-57 226.1 407 34.4
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-56 225.3 276 45.7
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.1e-56 223.8 464 32.3
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 9.1e-56 222.2 464 32.3
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 5.9e-55 219.5 523 30.2
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.0e-54 218.8 398 33.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.7e-54 218.0 293 40.6
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.9e-54 217.2 245 46.9
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 3.2e-53 213.8 511 31.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 6.1e-52 209.5 399 31.8
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.8e-51 208.0 271 45.8
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.2e-50 205.3 437 32.0
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 4.4e-50 203.4 539 28.4
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 7.5e-50 202.6 518 30.3
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.3e-49 201.8 391 32.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.8e-49 200.7 513 30.4
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.8e-49 200.7 421 33.0
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.1e-48 198.7 498 29.5
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.8e-48 198.0 249 42.6
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.6e-47 194.9 411 32.4
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 5.9e-47 193.0 444 31.1
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.0e-46 192.2 279 39.8
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.3e-46 191.0 481 29.3
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.0e-46 189.9 534 27.0
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 8.0e-44 182.6 568 27.5
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.0e-43 180.6 313 38.0
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.0e-43 180.3 267 40.8
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 4.9e-41 173.3 408 30.1
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 5.4e-40 169.9 428 30.4
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 7.0e-40 169.5 408 31.1
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.2e-39 168.7 407 30.2
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.6e-39 168.3 424 30.9
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.3e-38 164.5 258 40.7
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 5.0e-38 163.3 426 29.3
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.3e-33 148.7 241 38.6
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.7e-31 141.0 256 38.3
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 4.6e-31 140.2 248 35.1
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 6.0e-31 139.8 483 29.0
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 7.8e-31 139.4 156 41.7
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.5e-29 134.4 156 41.0
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 9.5e-29 132.5 128 55.5
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.8e-27 128.3 269 33.5
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.9e-25 120.9 271 27.7
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.9e-25 120.2 173 36.4
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.4e-24 118.6 262 31.3
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.4e-24 118.6 258 31.8
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 8.6e-22 109.4 117 43.6
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 3.6e-20 104.0 249 30.5
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 6.8e-19 99.8 167 37.1
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.6e-18 97.8 199 41.7
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.2e-17 94.7 202 30.7
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 3.2e-16 90.9 515 21.2
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 5.4e-16 90.1 140 38.6
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.5e-15 87.4 288 29.5
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 2.0e-10 71.6 469 23.5
Pp3c10_12370 Physcomitrium patens HOM05D003538 ORTHO05D004376 2.0e-10 71.6 368 22.3
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.4e-10 70.9 147 32.0
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 1.9e-08 65.1 111 36.9


User provided reference genes

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