Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G024500 Manihot esculenta HOM05D007452 ORTHO05D009375 2.5e-69 265.4 140 100.0
TWI34G0936 Tripterygium wilfordii HOM05D007452 ORTHO05D009375 8.1e-44 180.6 134 71.6
Ciclev10009852m.g Citrus clementina HOM05D007452 ORTHO05D009375 6.4e-41 171.0 122 70.5
Sabra18G0072700 Salix brachista HOM05D007452 ORTHO05D009375 4.2e-40 168.3 122 71.3
Potri.018G084400 Populus trichocarpa HOM05D007452 ORTHO05D009375 5.4e-40 167.9 124 69.4
COL.COLO4_34802 Corchorus olitorius HOM05D007452 ORTHO05D009375 7.1e-40 167.5 123 69.9
Gohir.D06G063500 Gossypium hirsutum HOM05D007452 ORTHO05D009375 6.0e-39 164.5 122 67.2
Gorai.010G074100 Gossypium raimondii HOM05D007452 ORTHO05D009375 6.0e-39 164.5 122 67.2
PSO210G5570 Papaver somniferum HOM05D007452 ORTHO05D009375 7.8e-39 164.1 119 68.1
Thecc.09G105200 Theobroma cacao HOM05D007452 ORTHO05D009375 7.8e-39 164.1 122 67.2
AUR62021449 Chenopodium quinoa HOM05D007452 ORTHO05D009375 1.7e-38 162.9 118 70.3
Duzib187G0798 Durio zibethinus HOM05D007452 ORTHO05D009375 3.9e-38 161.8 124 67.7
Gohir.A06G065000 Gossypium hirsutum HOM05D007452 ORTHO05D009375 3.9e-38 161.8 122 66.4
GSVIVG01015344001 Vitis vinifera HOM05D007452 ORTHO05D009375 3.9e-38 161.8 122 65.6
Rhsim03G0239200 Rhododendron simsii HOM05D007452 ORTHO05D009375 5.1e-38 161.4 139 61.2
CARHR193330 Cardamine hirsuta HOM05D007452 ORTHO05D009375 6.6e-38 161.0 122 66.4
CiPaw.04G161200 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.5e-37 159.8 125 65.6
Prupe.7G224900 Prunus persica HOM05D007452 ORTHO05D009375 1.9e-37 159.5 123 65.9
PGR102G0901 Punica granatum HOM05D007452 ORTHO05D009375 3.3e-37 158.7 119 68.1
vmacro06236 Vaccinium macrocarpon HOM05D007452 ORTHO05D009375 7.3e-37 157.5 121 67.8
A02p05660 Brassica napus HOM05D007452 ORTHO05D009375 9.6e-37 157.1 128 64.8
AL6G31080 Arabidopsis lyrata HOM05D007452 ORTHO05D009375 1.6e-36 156.4 124 62.9
BraA02t05518Z Brassica rapa HOM05D007452 ORTHO05D009375 1.6e-36 156.4 127 63.0
MD15G1192300 Malus domestica HOM05D007452 ORTHO05D009375 1.6e-36 156.4 121 66.1
Aqoxy7G01521 Aquilegia oxysepala HOM05D007452 ORTHO05D009375 2.8e-36 155.6 118 63.6
Dinv41642 Davidia involucrata HOM05D007452 ORTHO05D009375 2.8e-36 155.6 121 66.9
MD02G1057900 Malus domestica HOM05D007452 ORTHO05D009375 4.8e-36 154.8 123 64.2
AT5G19570 Arabidopsis thaliana HOM05D007452 ORTHO05D009375 6.2e-36 154.5 123 62.6
BolC2t06971H Brassica oleracea HOM05D007452 ORTHO05D009375 6.2e-36 154.5 136 60.3
BcaB05g23392 Brassica carinata HOM05D007452 ORTHO05D009375 1.1e-35 153.7 128 62.5
Eucgr.C01281 Eucalyptus grandis HOM05D007452 ORTHO05D009375 1.1e-35 153.7 130 64.6
Thhalv10014912m.g Eutrema salsugineum HOM05D007452 ORTHO05D009375 1.1e-35 153.7 124 65.3
Nn2g11650 Nelumbo nucifera HOM05D007452 ORTHO05D009375 1.1e-35 153.7 122 63.9
QL02p043240 Quercus lobata HOM05D007452 ORTHO05D009375 1.1e-35 153.7 121 66.9
QL02p044487 Quercus lobata HOM05D007452 ORTHO05D009375 1.1e-35 153.7 121 66.9
BcaC03g13689 Brassica carinata HOM05D007452 ORTHO05D009375 1.4e-35 153.3 123 64.2
BNapus_Darmor_BZH_scaffold_38p02290 Brassica napus HOM05D007452 ORTHO05D009375 1.4e-35 153.3 123 64.2
Atru.chr7.1416 Acer truncatum HOM05D007452 ORTHO05D009375 2.4e-35 152.5 129 63.6
Cc06_g10100 Coffea canephora HOM05D007452 ORTHO05D009375 2.4e-35 152.5 121 63.6
Nitab4.5_0002165g0070 Nicotiana tabacum HOM05D007452 ORTHO05D009375 3.1e-35 152.1 121 63.6
Nitab4.5_0003331g0020 Nicotiana tabacum HOM05D007452 ORTHO05D009375 3.1e-35 152.1 121 63.6
FAN28G0080 Fragaria x ananassa HOM05D007452 ORTHO05D009375 5.3e-35 151.4 121 66.1
FvH4_1g05720 Fragaria vesca HOM05D007452 ORTHO05D009375 6.9e-35 151.0 121 65.3
FAN19G0597 Fragaria x ananassa HOM05D007452 ORTHO05D009375 6.9e-35 151.0 121 65.3
FAN26G0145 Fragaria x ananassa HOM05D007452 ORTHO05D009375 9.0e-35 150.6 121 66.1
PGSC0003DMG400023982 Solanum tuberosum HOM05D007452 ORTHO05D009375 9.0e-35 150.6 121 62.8
Haze_25788 Corylus avellana HOM05D007452 ORTHO05D009375 1.2e-34 150.2 123 64.2
FAN26G2311 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.2e-34 150.2 121 65.3
THA.LOC104799068 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 1.5e-34 149.8 123 64.2
THA.LOC104808980 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 1.5e-34 149.8 123 64.2
MELO3C024705.2 Cucumis melo HOM05D007452 ORTHO05D009375 2.0e-34 149.4 121 66.1
Cfa003221 Carpinus fangiana HOM05D007452 ORTHO05D009375 4.5e-34 148.3 124 64.5
ClCG06G008870 Citrullus lanatus HOM05D007452 ORTHO05D009375 5.8e-34 147.9 119 66.4
TAR636G3481 Trochodendron aralioides HOM05D007452 ORTHO05D009375 5.8e-34 147.9 119 60.5
Nitab4.5_0000066g0140 Nicotiana tabacum HOM05D007452 ORTHO05D009375 1.3e-33 146.7 121 60.3
Sed0023851 Sechium edule HOM05D007452 ORTHO05D009375 1.3e-33 146.7 121 64.5
RcHm_v2.0_Chr2g0091331 Rosa chinensis HOM05D007452 ORTHO05D009375 2.2e-33 146.0 121 64.5
Solyc11g006870.1 Solanum lycopersicum HOM05D007452 ORTHO05D009375 2.2e-33 146.0 121 60.3
Sopen11g002770 Solanum pennellii HOM05D007452 ORTHO05D009375 2.2e-33 146.0 121 60.3
Ah.09g230860 Amaranthus hybridus HOM05D007452 ORTHO05D009375 2.9e-33 145.6 119 63.0
Ca_17318_v3 Cicer arietinum L. HOM05D007452 ORTHO05D009375 2.9e-33 145.6 127 59.1
Lsat_1_v5_gn_5_147400 Lactuca sativa HOM05D007452 ORTHO05D009375 6.4e-33 144.4 118 65.3
Oeu002255.1 Olea europaea HOM05D007452 ORTHO05D009375 6.4e-33 144.4 121 62.0
HanXRQChr10g0318511 Helianthus annuus HOM05D007452 ORTHO05D009375 8.4e-33 144.1 118 65.3
Psat7g014560 Pisum sativum HOM05D007452 ORTHO05D009375 8.4e-33 144.1 115 60.9
Medtr8g102920 Medicago truncatula HOM05D007452 ORTHO05D009375 1.4e-32 143.3 127 59.1
Glyma.08G035800 Glycine max HOM05D007452 ORTHO05D009375 1.9e-32 142.9 126 61.9
SalBow6G2888 Salvia bowleyana HOM05D007452 ORTHO05D009375 1.9e-32 142.9 121 62.0
Aa31LG5G13720 Aethionema arabicum HOM05D007452 ORTHO05D009375 2.4e-32 142.5 120 63.3
Peaxi162Scf00539g00066 Petunia axillaris HOM05D007452 ORTHO05D009375 4.2e-32 141.7 117 59.8
Migut.J01126 Erythranthe guttata HOM05D007452 ORTHO05D009375 5.4e-32 141.4 121 61.2
Phvul.002G311100 Phaseolus vulgaris HOM05D007452 ORTHO05D009375 5.4e-32 141.4 125 59.2
Carub.0006s1792 Capsella rubella HOM05D007452 ORTHO05D009375 9.3e-32 140.6 124 60.5
CAN.G645.18 Capsicum annuum HOM05D007452 ORTHO05D009375 1.2e-31 140.2 122 60.7
Glyma.05G228800 Glycine max HOM05D007452 ORTHO05D009375 1.2e-31 140.2 114 64.0
MSTRG.19570 Avicennia marina HOM05D007452 ORTHO05D009375 4.6e-31 138.3 121 61.2
unitig_899.g15033 Utricularia gibba HOM05D007452 ORTHO05D009375 6.0e-31 137.9 117 59.8
EL10Ac8g18425 Beta vulgaris HOM05D007452 ORTHO05D009375 7.9e-31 137.5 105 63.8
Lalb_Chr05g0223071 Lupinus albus HOM05D007452 ORTHO05D009375 1.0e-30 137.1 120 60.0
MBI04_g14927_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 1.0e-30 137.1 114 58.8
HPP92_008140 Vanilla planifolia HOM05D007452 ORTHO05D009375 3.9e-30 135.2 122 57.4
SGA_v2.0_scaffold10G05148 Striga asiatica HOM05D007452 ORTHO05D009375 1.9e-29 132.9 121 58.7
DCAR_012055 Daucus carota HOM05D007452 ORTHO05D009375 2.5e-29 132.5 116 62.1
Sc08g0007740 Simmondsia chinensis HOM05D007452 ORTHO05D009375 2.5e-29 132.5 120 60.0
CDE02G1573 Ceratophyllum demersum HOM05D007452 ORTHO05D009375 2.4e-27 125.9 118 52.5
ATR0315G055 Amborella trichopoda HOM05D007452 ORTHO05D009375 6.9e-27 124.4 115 56.5
HanXRQChr03g0087651 Helianthus annuus HOM05D007452 ORTHO05D009375 6.9e-27 124.4 118 58.5
CsaV3_1G020810 Cucumis sativus L. HOM05D007452 ORTHO05D009375 9.9e-26 120.6 103 64.1
CSS0004194 Camellia sinensis var. sinensis HOM05D007452 ORTHO05D009375 1.7e-25 119.8 121 54.5
Os05g0188300 Oryza sativa ssp. japonica HOM05D007452 ORTHO05D009375 1.1e-24 117.1 126 54.0
SEGI_20837 Sequoiadendron giganteum HOM05D007452 ORTHO05D009375 2.7e-23 112.5 128 50.0
CiPaw.08G085300 Carya illinoinensis HOM05D007452 ORTHO05D009375 6.0e-23 111.3 115 53.0
Zm00001eb089090 Zea mays HOM05D007452 ORTHO05D009375 1.3e-22 110.2 126 52.4
Sopen08g027980 Solanum pennellii HOM05D007452 ORTHO05D009375 1.5e-21 106.7 115 50.4
Cfa001992 Carpinus fangiana HOM05D007452 ORTHO05D009375 7.4e-21 104.4 96 59.4
SMO119G0523 Selaginella moellendorffii HOM05D007452 ORTHO05D009375 3.4e-18 95.5 110 47.3
Pp3c5_13600 Physcomitrium patens HOM05D007452 ORTHO05D009375 4.9e-17 91.7 110 47.3
Mapoly0005s0019 Marchantia polymorpha HOM05D007452 ORTHO05D009375 1.6e-15 86.7 116 43.1
HanXRQChr02g0047631 Helianthus annuus HOM05D007452 ORTHO05D009375 3.5e-15 85.5 100 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3226 Anthoceros agrestis HOM05D007452 ORTHO05D009375 3.9e-14 82.0 120 41.7
MBI12_g37480_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 3.2e-08 62.4 51 64.7


User provided reference genes

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