Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 1.3e-158 563.1 304 100.0
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.1e-122 443.7 304 76.3
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 3.6e-121 438.7 308 75.0
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 9.7e-119 430.6 305 76.4
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 1.3e-118 430.3 305 72.1
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 2.7e-113 412.5 306 66.7
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 4.0e-112 408.7 307 72.6
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 4.4e-111 405.2 304 71.4
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 4.8e-110 401.7 305 70.8
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 4.5e-108 395.2 308 68.2
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.9e-107 392.5 304 76.3
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 8.6e-107 391.0 306 72.2
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 5.2e-104 381.7 304 63.8
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 8.9e-104 380.9 305 68.5
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.2e-103 380.6 308 65.9
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.5e-103 380.2 308 65.6
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 8.3e-102 374.4 313 66.5
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.4e-101 373.6 308 68.2
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 3.2e-101 372.5 320 65.6
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 5.4e-101 371.7 308 67.9
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 7.0e-101 371.3 304 63.8
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 1.6e-100 370.2 298 67.8
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 3.5e-100 369.0 320 62.5
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.5e-98 362.8 308 63.0
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 1.4e-96 357.1 304 64.1
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 1.1e-93 347.4 304 60.5
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 2.0e-92 343.2 312 62.5
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 4.6e-92 342.0 322 61.2
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.3e-91 340.5 304 63.2
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.9e-91 339.0 297 58.9
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 6.6e-91 338.2 297 62.0
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 8.6e-91 337.8 304 63.2
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 8.6e-91 337.8 306 62.1
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.5e-90 337.0 292 63.0
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 4.3e-90 335.5 298 60.4
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 1.6e-89 333.6 313 60.4
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.8e-88 330.1 304 62.5
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 3.1e-88 329.3 304 62.5
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 4.0e-88 328.9 304 58.6
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.2e-87 327.4 304 58.6
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.2e-87 327.4 307 62.2
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 1.5e-87 327.0 309 58.9
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 7.5e-87 324.7 306 59.8
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.3e-86 323.9 313 57.2
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 2.2e-86 323.2 321 56.1
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 3.7e-86 322.4 296 57.1
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 4.9e-86 322.0 321 56.1
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 6.4e-86 321.6 237 75.1
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.1e-85 320.9 301 60.1
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 1.4e-85 320.5 322 56.2
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 1.6e-84 317.0 310 60.0
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 2.7e-84 316.2 310 60.0
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 7.8e-84 314.7 309 59.2
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 7.8e-84 314.7 307 56.4
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 5.1e-83 312.0 245 64.9
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 1.1e-82 310.8 292 55.8
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 2.8e-81 306.2 311 60.1
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 6.8e-80 301.6 299 57.2
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 8.9e-80 301.2 304 58.2
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 8.9e-80 301.2 333 54.7
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 2.6e-79 299.7 356 54.8
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 3.4e-79 299.3 312 61.5
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.4e-77 293.9 305 52.5
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 4.1e-77 292.4 291 57.7
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 7.1e-77 291.6 326 55.2
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 2.1e-76 290.0 273 59.0
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 4.6e-76 288.9 381 45.1
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 2.3e-75 286.6 291 57.4
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 2.3e-75 286.6 291 57.4
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 3.9e-75 285.8 317 53.0
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 8.6e-75 284.6 284 54.2
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 1.5e-74 283.9 295 53.2
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 6.2e-73 278.5 308 52.9
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.2e-71 274.2 306 52.3
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 1.2e-71 274.2 306 57.8
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 2.6e-71 273.1 352 50.6
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.6e-68 263.8 309 50.2
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.3e-67 260.8 307 49.8
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 9.6e-66 254.6 299 52.2
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 3.1e-64 249.6 199 60.3
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 1.3e-62 244.2 343 47.5
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 1.7e-62 243.8 342 45.9
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 2.4e-61 240.0 322 49.7
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 4.6e-60 235.7 305 49.8
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 3.9e-59 232.6 280 51.8
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 6.6e-59 231.9 332 48.8
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 9.6e-58 228.0 313 49.8
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.4e-56 224.2 325 51.4
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.4e-56 224.2 172 70.9
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.0e-56 222.6 223 60.1
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 3.8e-54 216.1 304 46.7
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 4.9e-54 215.7 313 46.3
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 4.8e-49 199.1 236 50.4
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 1.1e-48 198.0 326 46.0
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 5.8e-47 192.2 322 44.4
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 3.2e-45 186.4 315 45.1
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 3.3e-42 176.4 302 44.4
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.8e-40 170.6 330 41.5
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.8e-40 170.6 328 42.1
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 2.4e-40 170.2 329 41.6
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 7.6e-39 165.2 329 40.1
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 1.7e-38 164.1 296 45.6
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 2.2e-38 163.7 325 42.8
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.1e-37 161.4 240 45.8
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.4e-37 161.0 113 77.9
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 7.2e-37 158.7 314 43.0
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 2.7e-36 156.8 317 41.6
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 6.3e-33 145.6 312 40.1
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.5e-31 141.0 307 38.1
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 2.6e-31 140.2 315 40.0
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.7e-30 137.5 303 40.3
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 8.5e-30 135.2 340 39.7
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 2.5e-29 133.7 318 37.7
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 4.2e-29 132.9 313 38.3
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 9.4e-29 131.7 290 40.3
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.1e-28 130.6 311 38.6
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 5.7e-26 122.5 319 36.4
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.3e-25 121.3 331 36.3
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 2.8e-25 120.2 311 37.9
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 2.8e-25 120.2 311 37.9
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 2.4e-24 117.1 327 34.6
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 9.1e-24 115.2 274 38.7
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.4e-21 107.8 277 36.5
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 2.5e-21 107.1 297 37.4
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 5.3e-16 89.4 141 44.7
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 1.3e-14 84.7 313 32.9
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 2.5e-13 80.5 239 38.1
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 5.5e-13 79.3 152 38.8
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.6e-12 77.8 77 54.5
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 6.1e-12 75.9 37 81.1
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 2.2e-06 57.4 40 62.5
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 3.8e-06 56.6 40 65.0
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.8e-06 56.6 40 65.0
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 5.0e-06 56.2 35 60.0
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 6.5e-06 55.8 40 62.5
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.5e-06 55.8 43 60.5
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 6.5e-06 55.8 40 60.0
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 8.5e-06 55.5 43 55.8


User provided reference genes

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