Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 8.8e-268 926.4 471 100.0
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 3.2e-201 705.3 472 77.1
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.6e-200 703.0 471 76.6
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 1.6e-200 703.0 472 77.5
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 8.7e-199 697.2 472 75.8
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 1.2e-197 693.3 472 75.6
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 2.4e-196 689.1 467 76.4
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 4.0e-196 688.3 476 75.0
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 6.9e-196 687.6 473 74.2
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 1.7e-194 682.9 471 74.7
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 2.9e-194 682.2 472 73.5
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 8.4e-194 680.6 421 81.0
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 1.1e-193 680.2 472 75.6
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 1.9e-193 679.5 475 74.7
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 1.6e-192 676.4 476 75.8
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 1.9e-190 669.5 450 74.7
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 9.6e-190 667.2 473 74.2
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 4.8e-189 664.8 408 79.9
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 6.2e-189 664.5 472 72.0
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 1.2e-187 660.2 470 73.4
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 9.9e-187 657.1 474 72.6
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.7e-186 656.4 472 73.1
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 1.1e-185 653.7 473 72.5
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 1.4e-185 653.3 380 83.2
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 2.4e-185 652.5 475 71.4
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 3.2e-185 652.1 473 74.0
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 7.1e-185 651.0 462 73.2
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 9.3e-185 650.6 476 72.9
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 3.5e-184 648.7 474 71.7
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 3.5e-184 648.7 476 71.6
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 4.6e-184 648.3 474 72.2
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 6.0e-184 647.9 473 73.4
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 7.9e-184 647.5 465 74.0
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 1.3e-183 646.7 474 71.7
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.3e-183 646.0 465 74.2
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 3.0e-183 645.6 473 73.4
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 5.1e-183 644.8 447 73.2
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.5e-182 643.3 373 84.5
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 3.3e-182 642.1 469 71.6
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 4.3e-182 641.7 475 70.5
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 5.6e-182 641.3 471 70.9
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 2.8e-181 639.0 476 70.4
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 4.8e-181 638.3 447 72.5
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 6.2e-181 637.9 489 69.9
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 1.1e-180 637.1 447 72.5
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 1.8e-180 636.3 469 70.6
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 1.2e-179 633.6 478 70.1
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 5.8e-179 631.3 472 70.1
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 2.2e-178 629.4 381 80.6
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 7.1e-177 624.4 466 69.7
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 9.3e-177 624.0 464 70.7
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.2e-176 623.6 372 80.1
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 4.6e-176 621.7 451 71.4
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 4.6e-176 621.7 475 69.5
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 1.0e-175 620.5 441 71.9
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 1.8e-175 619.8 472 69.3
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 8.7e-175 617.5 395 76.7
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 8.7e-175 617.5 463 69.8
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.5e-174 616.7 463 69.8
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 2.5e-174 615.9 424 71.9
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 3.3e-174 615.5 472 69.1
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 4.3e-174 615.1 473 68.5
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 4.3e-174 615.1 466 69.5
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 7.4e-174 614.4 470 71.1
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 2.1e-173 612.8 414 74.4
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 2.8e-173 612.5 485 67.6
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 4.8e-173 611.7 399 75.4
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 6.2e-173 611.3 473 68.3
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.8e-172 609.8 473 68.5
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 1.8e-172 609.8 473 67.7
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 6.9e-172 607.8 476 67.2
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 3.4e-171 605.5 499 66.1
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 7.6e-171 604.4 471 66.9
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 7.6e-171 604.4 483 68.1
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 7.6e-171 604.4 469 67.2
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.0e-170 604.0 403 75.2
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 1.7e-170 603.2 472 66.9
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 2.9e-170 602.4 379 77.3
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 8.4e-170 600.9 431 70.1
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 9.3e-169 597.4 463 67.2
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 9.3e-169 597.4 468 65.8
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 2.1e-168 596.3 472 66.5
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 3.5e-168 595.5 465 69.9
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 1.0e-167 594.0 411 72.5
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 2.3e-167 592.8 482 65.6
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 5.1e-167 591.7 478 64.4
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 2.5e-166 589.3 481 64.4
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 2.8e-165 585.9 480 63.3
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 1.4e-164 583.6 479 64.5
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 2.4e-164 582.8 479 64.3
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 2.4e-164 582.8 479 64.3
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 5.3e-164 581.6 384 75.0
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 2.0e-163 579.7 476 63.9
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 2.0e-163 579.7 476 63.9
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 4.5e-163 578.6 440 67.0
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 1.0e-162 577.4 471 64.3
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 2.2e-149 533.1 470 60.6
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.4e-148 530.4 315 81.9
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.6e-144 516.9 345 75.7
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 8.8e-143 511.1 431 58.7
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 1.1e-142 510.8 394 61.9
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.7e-141 506.9 400 68.5
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.4e-140 503.8 472 55.9
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 9.5e-113 411.4 247 80.6
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 4.4e-110 402.5 349 59.9
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 7.8e-107 391.7 373 53.4
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.1e-103 381.3 363 52.9
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 4.0e-103 379.4 410 48.0
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 5.8e-102 375.6 408 49.3
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.7e-98 364.0 416 47.8
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 3.2e-92 343.2 371 49.9
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 5.6e-81 305.8 424 43.4
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 9.6e-81 305.1 399 45.4
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 6.4e-77 292.4 337 45.1
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 3.5e-59 233.4 135 79.3
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 9.7e-49 198.7 323 43.7
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 3.2e-44 183.7 104 83.7
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 3.3e-41 173.7 99 79.8
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.1e-31 142.1 94 79.8
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 5.3e-31 139.8 94 78.7
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.5e-30 138.3 260 36.5
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.8e-29 133.7 325 32.3
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.2e-27 128.6 73 84.9
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 2.1e-27 127.9 89 78.7
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 2.3e-26 124.4 82 75.6
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 6.3e-24 116.3 144 53.5
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 5.0e-21 106.7 358 28.2
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 8.0e-19 99.4 143 51.7
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.3e-16 89.7 73 65.8
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.2e-13 81.3 53 69.8
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.5e-13 79.7 134 47.0
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 2.0e-06 58.2 76 47.4


User provided reference genes

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