Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 3.3e-62 241.9 157 100.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.6e-40 169.9 131 76.3
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 2.6e-30 136.0 158 63.3
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.2e-26 122.9 123 55.3
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.9e-25 119.8 128 58.6
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 4.2e-25 118.6 69 79.7
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.1e-24 116.3 63 85.7
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 3.6e-24 115.5 136 52.9
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 4.7e-24 115.2 72 73.6
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 6.1e-24 114.8 94 66.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.0e-23 114.0 72 76.4
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.4e-23 113.6 68 77.9
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.4e-23 113.6 68 77.9
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.4e-23 113.6 68 77.9
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 3.0e-23 112.5 90 65.6
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.0e-23 112.5 122 52.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 4.0e-23 112.1 125 51.2
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 5.2e-23 111.7 58 87.9
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 5.2e-23 111.7 63 82.5
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 5.2e-23 111.7 63 82.5
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.8e-23 111.3 123 48.8
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 6.8e-23 111.3 60 85.0
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.5e-22 110.2 123 52.0
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.5e-22 110.2 53 90.6
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 2.0e-22 109.8 95 63.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 2.0e-22 109.8 95 63.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 2.0e-22 109.8 95 63.2
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 3.4e-22 109.0 124 52.4
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.4e-22 108.6 123 52.0
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 5.7e-22 108.2 63 76.2
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 5.7e-22 108.2 123 52.0
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 5.7e-22 108.2 134 55.2
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.5e-22 107.8 123 51.2
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 7.5e-22 107.8 93 61.3
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 3.7e-21 105.5 139 58.3
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 4.8e-21 105.1 127 52.0
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 4.8e-21 105.1 140 49.3
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 4.8e-21 105.1 62 80.6
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.3e-21 104.8 123 50.4
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 1.1e-20 104.0 54 87.0
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.4e-20 103.6 122 59.0
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.8e-20 103.2 126 51.6
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.8e-20 103.2 85 62.4
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.8e-20 103.2 60 80.0
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 4.1e-20 102.1 110 50.9
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.4e-20 101.7 131 51.9
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.4e-20 101.7 131 51.9
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.2e-19 100.5 114 51.8
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.6e-19 100.1 123 52.0
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 2.7e-19 99.4 92 62.0
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.5e-19 99.0 60 75.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 3.5e-19 99.0 135 51.1
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 3.5e-19 99.0 126 50.8
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 7.7e-19 97.8 105 51.4
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.0e-18 97.4 124 48.4
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 1.7e-18 96.7 112 54.5
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 2.9e-18 95.9 54 81.5
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 6.5e-18 94.7 60 75.0
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 6.5e-18 94.7 80 60.0
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 6.5e-18 94.7 56 80.4
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 6.5e-18 94.7 90 62.2
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.1e-17 94.0 53 83.0
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.5e-17 93.6 87 59.8
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.5e-17 93.6 125 41.6
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-17 93.6 60 71.7
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.9e-17 93.2 60 73.3
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.3e-17 92.4 70 64.3
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 3.3e-17 92.4 70 64.3
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.2e-17 92.0 92 53.3
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 5.5e-17 91.7 59 72.9
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 5.5e-17 91.7 78 61.5
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 7.2e-17 91.3 145 45.5
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 9.5e-17 90.9 63 68.3
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.6e-16 90.1 119 52.9
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.6e-16 90.1 52 82.7
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 3.6e-16 89.0 118 50.8
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 6.1e-16 88.2 54 79.6
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 6.1e-16 88.2 78 61.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 8.0e-16 87.8 45 88.9
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 8.0e-16 87.8 45 84.4
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 8.0e-16 87.8 52 80.8
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.4e-15 87.0 47 85.1
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.8e-15 86.7 123 47.2
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.8e-15 86.7 47 85.1
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.3e-15 86.3 86 57.0
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 5.2e-15 85.1 47 83.0
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 6.8e-15 84.7 58 74.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 6.8e-15 84.7 58 74.1
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.5e-14 83.6 100 53.0
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.5e-14 83.6 44 86.4
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.5e-14 83.6 56 71.4
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 2.0e-14 83.2 50 78.0
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.6e-14 82.8 57 73.7
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.6e-14 82.8 73 61.6
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 3.4e-14 82.4 64 59.4
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 4.4e-14 82.0 132 54.5
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 4.4e-14 82.0 69 62.3
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 7.5e-14 81.3 60 66.7
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 7.5e-14 81.3 61 67.2
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 9.8e-14 80.9 57 70.2
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 9.8e-14 80.9 71 64.8
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.3e-13 80.5 69 60.9
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.3e-13 80.5 50 78.0
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 4.9e-13 78.6 52 73.1
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 4.9e-13 78.6 57 68.4
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 6.3e-13 78.2 44 79.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 6.3e-13 78.2 52 71.2
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 8.3e-13 77.8 81 53.1
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.1e-12 77.4 60 63.3
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.1e-12 77.4 84 50.0
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.4e-12 77.0 42 83.3
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.8e-12 76.6 109 53.2
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 2.4e-12 76.3 82 56.1
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 4.1e-12 75.5 43 79.1
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 5.4e-12 75.1 74 58.1
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 5.4e-12 75.1 69 79.7
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 7.0e-12 74.7 49 77.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 9.2e-12 74.3 40 87.5
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.6e-11 73.6 125 37.6
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 3.5e-11 72.4 40 82.5
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 4.5e-11 72.0 52 69.2
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 7.8e-11 71.2 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 7.8e-11 71.2 35 91.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.7e-10 70.1 35 82.9
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.7e-10 70.1 70 52.9
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 2.3e-10 69.7 64 53.1
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 2.9e-10 69.3 35 82.9
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 5.0e-10 68.6 68 52.9
Gorai.004G279900 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.6e-06 56.2 153 32.0
Gohir.D08G261800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.8e-06 55.1 91 37.4
Dinv38038 Davidia involucrata HOM05D005853 ORTHO05D007308 9.8e-06 54.3 42 66.7


User provided reference genes

Program Settings