Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 1.7e-60 235.7 109 100.0
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 3.4e-21 105.1 81 63.0
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 2.9e-17 92.0 83 56.6
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 9.5e-16 87.0 65 63.1
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 2.6e-13 79.0 66 60.6
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 2.6e-13 79.0 86 45.3
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 3.4e-13 78.6 85 45.9
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 4.4e-13 78.2 78 50.0
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 5.8e-13 77.8 80 52.5
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 1.3e-12 76.6 88 45.5
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 1.3e-12 76.6 71 50.7
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.2e-12 75.9 65 53.8
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 4.9e-12 74.7 83 45.8
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 8.3e-12 73.9 50 68.0
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.4e-11 73.2 81 43.2
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 3.2e-11 72.0 88 44.3
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 3.2e-11 72.0 81 42.0
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 7.0e-11 70.9 65 50.8
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 7.0e-11 70.9 49 61.2
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.2e-10 70.1 66 50.0
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.6e-10 69.7 63 47.6
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 1.6e-10 69.7 85 45.9
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 2.0e-10 69.3 79 48.1
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.0e-10 69.3 85 44.7
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 2.0e-10 69.3 85 44.7
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.5e-10 68.6 85 44.7
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.5e-10 68.6 65 47.7
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.5e-10 68.6 65 47.7
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 4.6e-10 68.2 72 43.1
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 6.0e-10 67.8 33 75.8
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 7.8e-10 67.4 79 41.8
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 7.8e-10 67.4 87 42.5
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.3e-09 66.6 73 43.8
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 1.7e-09 66.2 30 80.0
Nn8g39210 Nelumbo nucifera HOM05D007609 ORTHO05D009539 1.7e-09 66.2 77 45.5
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 2.3e-09 65.9 73 41.1
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 3.0e-09 65.5 40 67.5
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 3.9e-09 65.1 64 50.0
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 3.9e-09 65.1 74 44.6
AT1G52342 Arabidopsis thaliana HOM05D010933 ORTHO05D013136 6.6e-09 64.3 74 41.9
CsaV3_7G033200 Cucumis sativus L. HOM05D010933 ORTHO05D013136 6.6e-09 64.3 81 43.2
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 6.6e-09 64.3 78 43.6
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 8.6e-09 63.9 35 68.6
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 8.6e-09 63.9 30 76.7
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 1.1e-08 63.5 33 69.7
Psat1g041120 Pisum sativum HOM05D007609 ORTHO05D009539 1.1e-08 63.5 69 46.4
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 1.1e-08 63.5 78 43.6
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 1.5e-08 63.2 83 38.6
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 1.5e-08 63.2 45 53.3
Nitab4.5_0003351g0110 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.9e-08 62.8 63 44.4
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 1.9e-08 62.8 75 42.7
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 2.5e-08 62.4 88 39.8
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 2.5e-08 62.4 40 65.0
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 3.3e-08 62.0 42 61.9
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 3.3e-08 62.0 78 43.6
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 3.3e-08 62.0 77 44.2
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 3.3e-08 62.0 64 45.3
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 4.3e-08 61.6 62 51.6
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 4.3e-08 61.6 81 43.2
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 4.3e-08 61.6 78 44.9
AL4G13500 Arabidopsis lyrata HOM05D010933 ORTHO05D013136 5.6e-08 61.2 51 49.0
A08p02170 Brassica napus HOM05D010933 ORTHO05D013136 5.6e-08 61.2 74 43.2
CARHR042480 Cardamine hirsuta HOM05D010933 ORTHO05D013136 5.6e-08 61.2 86 37.2
MELO3C024233.2 Cucumis melo HOM05D010933 ORTHO05D013136 5.6e-08 61.2 86 41.9
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 5.6e-08 61.2 69 44.9
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 5.6e-08 61.2 78 48.7
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 7.3e-08 60.8 44 59.1
BolC3t21384H Brassica oleracea HOM05D010933 ORTHO05D013136 1.2e-07 60.1 74 43.2
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 1.2e-07 60.1 32 71.9
C03p90620 Brassica napus HOM05D010933 ORTHO05D013136 1.6e-07 59.7 74 43.2
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 2.1e-07 59.3 38 63.2
BcaB04g17155 Brassica carinata HOM05D010933 ORTHO05D013136 2.8e-07 58.9 74 39.2
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 3.6e-07 58.5 35 68.6
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 3.6e-07 58.5 73 42.5
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 3.6e-07 58.5 96 36.5
AL1G60560 Arabidopsis lyrata HOM05D010933 ORTHO05D013136 4.7e-07 58.2 73 37.0
BraA08t32264Z Brassica rapa HOM05D010933 ORTHO05D013136 4.7e-07 58.2 74 41.9
PGSC0003DMG400005605 Solanum tuberosum HOM05D007609 ORTHO05D009539 4.7e-07 58.2 80 41.2
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 6.2e-07 57.8 50 52.0
Sp1g38930 Schrenkiella parvula HOM05D010933 ORTHO05D013136 6.2e-07 57.8 75 41.3
BcaC01g01321 Brassica carinata HOM05D010933 ORTHO05D013136 8.0e-07 57.4 74 41.9
BcaC01g01322 Brassica carinata HOM05D010933 ORTHO05D013136 8.0e-07 57.4 74 41.9
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 1.1e-06 57.0 90 36.7
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 1.1e-06 57.0 83 41.0
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.4e-06 56.6 90 36.7
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.4e-06 56.6 90 36.7
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.4e-06 56.6 91 36.3
ATR0559G294 Amborella trichopoda HOM05D007609 ORTHO05D009539 1.8e-06 56.2 28 71.4
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 1.8e-06 56.2 29 65.5
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 4.0e-06 55.1 84 38.1
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 4.0e-06 55.1 84 39.3
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 5.2e-06 54.7 32 65.6
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 5.2e-06 54.7 48 50.0
FAN23G1574 Fragaria x ananassa HOM05D007609 ORTHO05D009539 5.2e-06 54.7 29 75.9
Lalb_Chr05g0222821 Lupinus albus HOM05D007609 ORTHO05D009539 5.2e-06 54.7 50 52.0
Sed0016972 Sechium edule HOM05D007609 ORTHO05D009539 5.2e-06 54.7 32 65.6
C06p13920 Brassica napus HOM05D010933 ORTHO05D013136 6.8e-06 54.3 48 47.9
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 6.8e-06 54.3 48 50.0
SGA_v2.0_scaffold5G02584 Striga asiatica HOM05D007609 ORTHO05D009539 6.8e-06 54.3 44 54.5


User provided reference genes

Program Settings