Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.6e-110 402.1 209 100.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 9.7e-94 347.1 209 85.6
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.4e-87 326.6 208 79.8
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.8e-87 324.3 209 78.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 2.6e-86 322.4 208 78.8
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.8e-85 318.9 209 76.6
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.1e-84 317.0 209 75.6
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 7.0e-84 314.3 211 77.3
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.0e-84 314.3 190 84.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 9.1e-84 313.9 209 78.5
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.2e-83 313.5 200 77.5
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.2e-83 313.5 190 84.7
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.7e-83 312.4 199 79.4
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.7e-83 312.4 208 75.5
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.5e-83 311.6 208 77.4
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.0e-82 310.5 190 83.7
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.3e-82 309.3 190 83.2
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 2.9e-82 308.9 209 74.2
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.1e-81 307.0 207 74.4
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 2.5e-81 305.8 203 74.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.3e-81 305.4 200 77.0
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.2e-81 305.1 196 79.1
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 4.2e-81 305.1 203 76.8
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.5e-81 304.7 204 76.0
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 7.2e-81 304.3 209 72.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 7.2e-81 304.3 204 76.5
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 9.5e-81 303.9 204 76.0
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.6e-80 303.1 203 77.8
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.1e-80 302.8 193 75.1
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.1e-80 302.8 209 75.1
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.1e-80 302.8 209 75.1
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.1e-80 302.8 203 75.9
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.1e-80 302.8 203 75.9
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.6e-80 302.0 199 77.9
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 3.6e-80 302.0 204 75.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 3.6e-80 302.0 209 72.7
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.6e-80 302.0 199 77.4
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 4.7e-80 301.6 223 70.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 8.0e-80 300.8 180 83.3
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.0e-79 300.4 204 75.5
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.0e-79 300.4 203 78.3
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.4e-79 300.1 207 72.9
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.4e-79 300.1 204 75.5
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.0e-79 298.9 207 71.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 5.2e-79 298.1 210 73.8
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.2e-78 297.0 203 75.9
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.6e-78 295.8 204 73.5
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 9.8e-78 293.9 200 77.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.7e-77 293.1 211 72.5
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.7e-77 293.1 180 80.0
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.7e-77 293.1 206 72.3
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.8e-77 292.4 225 70.2
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.3e-77 291.2 190 76.8
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 8.3e-77 290.8 176 81.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.8e-76 289.7 197 74.6
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.4e-76 289.3 187 77.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.1e-76 288.9 189 76.7
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 9.2e-76 287.3 208 73.6
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 9.2e-76 287.3 196 75.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 5.9e-75 284.6 204 71.1
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 5.9e-75 284.6 208 70.7
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 7.8e-75 284.3 202 73.3
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.3e-74 282.7 207 71.5
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.9e-74 282.0 207 71.5
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.0e-74 281.6 202 71.3
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 5.0e-74 281.6 201 74.6
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.0e-74 281.6 293 54.9
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 4.7e-72 275.0 206 67.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 8.0e-72 274.2 195 70.8
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.0e-72 274.2 206 67.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.0e-71 273.9 206 67.5
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.0e-71 273.9 201 67.7
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.8e-71 273.1 207 69.6
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.8e-71 273.1 197 69.5
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.3e-71 272.7 206 68.0
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.3e-71 272.7 195 70.3
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.3e-71 272.7 206 66.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.1e-71 272.3 206 67.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.1e-71 272.3 206 67.5
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.2e-71 271.6 209 67.5
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.8e-71 271.2 203 67.5
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.9e-71 270.8 173 77.5
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.2e-70 270.4 206 68.0
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.0e-70 269.6 161 82.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.0e-70 269.6 206 68.0
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.0e-70 269.6 207 67.6
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.0e-70 269.6 211 68.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.4e-70 268.9 185 69.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.4e-70 268.5 207 66.7
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 5.8e-70 268.1 208 66.8
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 5.8e-70 268.1 204 67.6
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 7.5e-70 267.7 190 71.6
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-69 266.5 206 67.0
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.7e-69 266.5 158 82.9
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.2e-69 266.2 203 67.5
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.7e-69 265.4 207 64.7
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.4e-69 264.6 211 65.9
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 6.4e-69 264.6 197 66.5
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.4e-68 263.5 206 66.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.2e-67 260.4 207 63.8
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.6e-67 260.0 207 65.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.6e-67 260.0 212 65.1
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.0e-67 259.6 209 62.2
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.7e-67 259.2 207 62.8
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 3.5e-67 258.8 212 64.6
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 5.0e-66 255.0 206 65.0
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 6.6e-66 254.6 201 65.7
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.9e-65 253.1 210 64.3
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.3e-65 252.3 198 64.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.6e-64 250.0 181 72.4
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.8e-64 249.2 175 68.6
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.2e-64 248.1 199 63.3
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.8e-63 246.5 200 67.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 6.8e-63 244.6 181 70.7
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.0e-62 243.0 206 65.5
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 4.4e-62 241.9 169 74.6
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.8e-62 241.5 156 78.2
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 7.5e-62 241.1 175 66.9
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.2e-61 239.6 166 74.1
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.7e-59 232.6 196 63.3
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 2.7e-59 232.6 170 67.6
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-56 223.8 200 62.0
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.9e-55 217.6 144 75.7
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.1e-52 210.7 190 55.3
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 5.1e-50 201.8 121 78.5
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.1e-50 201.8 124 79.8
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.6e-50 201.4 200 57.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.4e-46 189.1 154 66.2
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.9e-46 187.6 189 56.6
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.3e-45 187.2 197 53.3
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.4e-44 183.0 170 52.9
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.2e-43 180.6 151 57.6
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 3.5e-43 179.1 187 50.3
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.3e-42 176.4 120 70.8
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 3.9e-42 175.6 140 67.9
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 3.9e-42 175.6 104 84.6
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 8.7e-42 174.5 115 78.3
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.5e-38 163.7 159 53.5
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.1e-36 157.5 96 79.2
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 9.3e-36 154.5 172 47.1
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 7.8e-35 151.4 150 49.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.0e-31 137.9 173 48.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 3.8e-29 132.5 106 65.1
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 7.1e-20 101.7 99 56.6
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.9e-19 98.2 208 37.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 8.7e-18 94.7 175 34.9
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 4.3e-17 92.4 72 63.9
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.3e-16 90.9 55 72.7
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.6e-16 90.5 72 62.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 2.1e-16 90.1 59 69.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 2.2e-13 80.1 199 33.2
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.9e-12 77.0 93 47.3
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-11 74.3 47 74.5
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 3.3e-09 66.2 57 57.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.3e-08 64.3 40 77.5
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.0e-05 54.7 61 50.8


User provided reference genes

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