Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 3.7e-187 658.3 394 100.0
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 3.8e-147 525.4 401 76.1
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.9e-131 471.9 398 73.1
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.6e-129 465.3 398 73.1
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 6.7e-128 461.5 413 68.0
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.3e-126 457.2 398 71.9
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.4e-125 453.8 413 69.5
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.3e-123 447.2 404 72.3
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 2.9e-123 446.0 399 72.9
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 4.2e-122 442.2 396 65.7
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 5.5e-122 441.8 410 66.6
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 5.5e-122 441.8 412 68.0
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.8e-120 436.8 402 66.7
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 2.3e-120 436.4 399 71.2
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 6.7e-120 434.9 404 66.3
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.9e-119 433.3 403 66.7
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.2e-118 429.9 400 67.0
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 2.9e-115 419.5 411 65.5
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.6e-113 412.5 400 60.2
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.8e-112 410.2 406 62.6
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-110 404.1 390 58.5
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 8.2e-110 401.4 391 60.4
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 7.7e-108 394.8 415 56.4
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.5e-106 389.8 411 60.1
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 3.2e-106 389.4 409 59.4
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 3.2e-106 389.4 397 58.9
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.2e-105 387.5 406 60.6
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 2.7e-105 386.3 393 56.5
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 4.7e-105 385.6 428 60.3
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.8e-104 383.6 413 67.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.3e-103 379.4 404 59.9
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.3e-102 377.5 411 58.6
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.8e-102 376.3 395 63.3
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.1e-101 372.5 403 63.8
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 7.0e-101 371.7 417 60.7
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 7.7e-100 368.2 400 55.8
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.1e-98 364.4 405 62.0
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.5e-98 364.0 400 60.5
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 5.5e-98 362.1 395 58.5
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 7.2e-98 361.7 411 60.3
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 8.0e-97 358.2 439 50.1
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 6.7e-96 355.1 404 54.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 9.7e-95 351.3 399 52.4
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.3e-94 350.9 413 59.6
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.3e-94 350.9 395 59.2
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 6.3e-94 348.6 410 58.5
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.2e-92 344.4 395 57.7
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.6e-92 344.0 395 56.2
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.7e-91 340.5 399 54.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.9e-91 339.7 408 56.4
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 3.8e-91 339.3 402 56.0
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.9e-90 337.0 408 57.8
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 8.0e-89 331.6 396 51.5
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 4.0e-88 329.3 395 58.0
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 5.2e-88 328.9 404 59.9
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 8.3e-86 321.6 415 51.3
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.0e-83 314.7 403 58.1
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.9e-83 313.2 401 49.9
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 8.6e-83 311.6 395 59.2
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.6e-76 290.8 404 54.2
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 9.5e-74 281.6 398 51.8
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.7e-73 279.3 397 57.2
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.7e-73 279.3 397 57.2
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 5.2e-72 275.8 398 51.8
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 2.3e-67 260.4 399 50.4
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 1.1e-66 258.1 327 56.6
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.3e-64 250.4 326 56.1
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 6.0e-60 235.7 236 54.7
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.8e-57 226.9 405 41.2
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 3.4e-55 219.9 278 58.6
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.2e-52 211.5 477 38.8
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.6e-47 193.7 326 43.9
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 2.6e-47 193.7 324 51.9
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 4.9e-46 189.5 435 40.0
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.2e-45 186.8 292 43.5
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 3.4e-39 166.8 132 58.3
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 5.8e-39 166.0 424 37.7
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 2.9e-38 163.7 272 39.3
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.8e-38 163.3 423 39.5
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.9e-38 162.9 122 60.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 6.4e-38 162.5 130 57.7
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 8.4e-38 162.2 149 55.0
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.1e-37 161.8 153 51.6
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.4e-37 161.4 129 57.4
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.4e-37 160.6 134 56.0
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.4e-37 160.6 122 59.0
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 2.4e-37 160.6 135 54.8
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 3.2e-37 160.2 137 55.5
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 4.2e-37 159.8 270 38.9
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.2e-37 159.8 154 51.9
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 5.4e-37 159.5 147 53.1
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 9.3e-37 158.7 127 56.7
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 9.3e-37 158.7 127 56.7
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.2e-36 158.3 277 39.4
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.2e-36 158.3 125 56.0
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.2e-36 158.3 413 41.2
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.6e-36 157.9 258 39.1
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.6e-36 157.9 161 48.4
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 1.6e-36 157.9 178 57.9
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.1e-36 157.5 153 51.0
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.1e-36 157.5 153 51.0
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 2.1e-36 157.5 151 51.7
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.7e-36 157.1 131 55.0
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 3.5e-36 156.8 132 55.3
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.5e-36 156.8 121 57.9
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.5e-36 156.8 121 57.9
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 4.6e-36 156.4 287 35.9
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 6.0e-36 156.0 119 58.8
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 6.0e-36 156.0 125 57.6
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 7.8e-36 155.6 287 38.0
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 1.0e-35 155.2 257 40.5
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.0e-35 155.2 131 55.0
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.0e-35 155.2 279 37.3
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.3e-35 154.8 120 57.5
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.3e-35 154.8 431 36.0
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.7e-35 154.5 121 57.0
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.7e-35 154.5 129 54.3
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.0e-35 153.7 275 38.5
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 3.9e-35 153.3 146 50.0
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.1e-35 152.9 447 38.0
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.1e-34 151.8 426 34.5
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.9e-34 151.0 272 37.5
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.5e-34 150.6 289 35.6
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.5e-34 150.6 405 35.8
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 4.3e-34 149.8 453 33.8
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 5.6e-34 149.4 272 37.1
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 7.3e-34 149.1 313 34.2
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 9.6e-34 148.7 445 33.3
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 9.6e-34 148.7 270 36.7
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.1e-33 147.5 271 36.9
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 2.8e-33 147.1 464 34.3
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 2.8e-33 147.1 464 34.3
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 2.8e-33 147.1 417 32.1
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.6e-33 146.7 281 36.7
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 4.8e-33 146.4 439 35.5
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 8.1e-33 145.6 437 34.3
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.1e-32 145.2 425 36.7
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.4e-32 144.8 102 62.7
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.8e-32 144.4 446 36.1
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 3.1e-32 143.7 429 32.4
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.0e-32 143.3 430 36.3
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 5.3e-32 142.9 456 35.3
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 6.9e-32 142.5 433 35.1
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 6.9e-32 142.5 153 49.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.5e-31 141.4 449 33.4
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 2.0e-31 141.0 450 30.7
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.6e-31 140.6 429 34.3
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 9.9e-31 138.7 440 35.0
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.7e-30 137.9 399 31.3
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.1e-29 135.2 103 60.2
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 5.4e-29 132.9 106 55.7
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 9.3e-29 132.1 112 53.6
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 9.3e-29 132.1 112 53.6
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.2e-28 131.7 401 35.9
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.6e-28 131.3 446 31.6
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.0e-27 128.6 237 37.1
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-27 127.5 86 70.9
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 5.6e-26 122.9 252 35.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.6e-17 94.7 254 33.5
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 1.8e-08 64.7 45 68.9


User provided reference genes

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