Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 4.0e-111 404.8 211 100.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 8.9e-87 323.9 209 80.4
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 3.0e-74 282.3 202 71.8
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 9.6e-73 277.3 201 70.6
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.3e-72 276.9 206 69.9
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.8e-72 275.8 207 67.6
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.8e-72 275.8 201 70.6
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 4.8e-72 275.0 200 70.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 4.0e-71 271.9 207 66.2
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 4.0e-71 271.9 207 68.1
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 5.3e-71 271.6 205 69.3
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.2e-70 270.4 201 68.7
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.6e-70 269.2 207 67.1
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 9.9e-70 267.3 210 65.7
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 9.9e-70 267.3 210 65.7
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.9e-69 265.8 207 67.1
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 4.2e-68 261.9 207 65.7
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 4.2e-68 261.9 194 70.6
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 9.3e-68 260.8 211 64.5
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 9.3e-68 260.8 204 65.2
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.3e-68 260.8 201 67.7
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.2e-67 260.4 192 68.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.7e-67 259.2 211 64.0
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 6.0e-67 258.1 201 68.2
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 7.9e-67 257.7 208 63.5
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 3.0e-66 255.8 202 65.3
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.0e-66 255.8 207 64.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 3.9e-66 255.4 206 64.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 8.7e-66 254.2 211 62.6
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 8.7e-66 254.2 194 67.5
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.5e-65 253.4 207 64.7
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.5e-65 252.7 187 69.0
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.5e-65 252.7 206 64.1
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.3e-65 252.3 206 63.6
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 4.3e-65 251.9 191 67.0
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 2.8e-64 249.2 205 62.4
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 3.6e-64 248.8 212 63.2
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 6.2e-64 248.1 195 64.6
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 8.1e-64 247.7 204 60.3
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 8.1e-64 247.7 200 62.5
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.4e-63 246.1 205 62.9
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 4.0e-63 245.4 206 61.2
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.0e-62 243.0 190 65.3
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.6e-62 242.7 199 62.3
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.4e-62 242.3 208 59.6
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 5.8e-62 241.5 198 62.6
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 7.6e-62 241.1 203 60.1
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.9e-61 239.2 202 62.9
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 3.8e-61 238.8 202 62.4
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.9e-60 236.5 198 61.6
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.4e-60 236.1 198 61.6
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.4e-60 236.1 201 60.7
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 5.4e-60 235.0 194 60.8
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 9.3e-60 234.2 198 60.1
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.9e-59 231.1 204 61.3
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 7.9e-59 231.1 208 60.1
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.0e-58 230.7 204 60.8
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.0e-58 230.7 198 61.1
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.3e-58 229.6 203 62.6
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 5.1e-58 228.4 202 59.4
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.1e-57 227.3 196 61.2
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.9e-57 226.5 220 55.9
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.5e-57 226.1 179 65.4
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 5.6e-57 224.9 209 56.5
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 7.4e-57 224.6 205 53.7
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 1.3e-56 223.8 204 53.9
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.3e-56 223.8 208 57.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.6e-56 223.4 205 55.1
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 2.8e-56 222.6 192 57.8
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 6.2e-56 221.5 209 58.9
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 4.0e-55 218.8 196 56.6
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 9.0e-55 217.6 207 57.0
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.2e-54 217.2 207 59.9
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.0e-54 216.5 208 57.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 2.0e-54 216.5 205 57.1
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 4.5e-54 215.3 189 56.6
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 4.5e-54 215.3 200 54.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.3e-53 213.8 204 53.4
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.3e-53 213.8 204 53.4
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.7e-53 213.4 202 52.5
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 6.5e-53 211.5 198 53.0
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 8.4e-53 211.1 192 55.2
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.4e-52 210.3 197 55.8
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 4.2e-52 208.8 202 55.0
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 5.5e-52 208.4 202 54.5
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 5.5e-52 208.4 205 53.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 7.1e-52 208.0 212 51.9
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 7.1e-52 208.0 197 54.8
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.6e-51 206.8 206 55.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.6e-51 206.8 189 56.6
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 3.5e-51 205.7 170 61.2
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 6.0e-51 204.9 196 54.6
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 3.9e-50 202.2 192 54.2
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.1e-49 200.7 191 54.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 4.3e-49 198.7 194 55.2
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 4.3e-49 198.7 194 55.2
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 7.4e-49 198.0 215 49.3
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 7.4e-49 198.0 205 51.2
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 9.6e-49 197.6 215 48.8
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-47 194.1 188 53.2
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 1.1e-47 194.1 206 52.9
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 2.4e-47 193.0 197 50.3
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 4.1e-47 192.2 189 51.3
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 5.3e-47 191.8 206 52.4
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.2e-46 190.7 205 52.2
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 7.6e-46 188.0 193 52.8
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.0e-45 187.6 198 53.5
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.3e-45 187.2 139 65.5
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.9e-45 186.0 191 51.8
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 5.5e-44 181.8 129 69.0
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 6.7e-42 174.9 220 49.1
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 3.3e-41 172.6 204 48.0
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 4.5e-38 162.2 195 47.2
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.9e-37 159.5 121 67.8
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 5.5e-36 155.2 210 46.7
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.2e-35 154.1 124 65.3
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-35 153.7 198 48.5
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 3.3e-33 146.0 196 44.4
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.8e-32 142.9 196 43.4
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.8e-32 142.9 196 43.4
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 6.3e-32 141.7 197 43.1
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 3.1e-31 139.4 196 42.3
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 3.4e-30 136.0 197 43.1
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 4.5e-30 135.6 196 42.9
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.9e-29 132.9 196 44.9
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 5.0e-29 132.1 195 42.1
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.1e-25 120.9 85 70.6
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 1.4e-23 114.0 177 37.3
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 4.1e-23 112.5 183 32.8
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.0e-21 107.8 202 37.1
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.9e-20 103.6 183 38.8
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 4.2e-20 102.4 189 36.5
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 5.5e-20 102.1 181 35.4
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 6.1e-19 98.6 175 38.3
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.1e-12 77.8 74 58.1
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 1.5e-12 77.4 61 63.9
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 2.5e-12 76.6 74 55.4
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 2.5e-12 76.6 74 55.4
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 5.5e-12 75.5 61 60.7
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 7.2e-12 75.1 104 42.3
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.6e-11 73.9 70 54.3
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.7e-11 72.4 209 25.8
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.8e-10 70.5 95 36.8
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 1.8e-10 70.5 127 38.6
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 2.3e-10 70.1 190 32.1
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 1.1e-07 61.2 158 26.6
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.4e-07 60.8 50 54.0


User provided reference genes

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