Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G007000 Manihot esculenta HOM05D007253 ORTHO05D009055 4.3e-70 268.1 156 100.0
TWI63G1073 Tripterygium wilfordii HOM05D007253 ORTHO05D009055 9.3e-41 170.6 156 71.8
Ciclev10009764m.g Citrus clementina HOM05D007253 ORTHO05D009055 7.9e-40 167.5 151 73.5
COL.COLO4_18974 Corchorus olitorius HOM05D007253 ORTHO05D009055 1.8e-39 166.4 149 70.5
Prupe.1G396700 Prunus persica HOM05D007253 ORTHO05D009055 2.5e-38 162.5 148 70.3
Thecc.09G013200 Theobroma cacao HOM05D007253 ORTHO05D009055 2.5e-38 162.5 150 71.3
Duzib187G0122 Durio zibethinus HOM05D007253 ORTHO05D009055 5.7e-38 161.4 150 66.0
Nn8g40104 Nelumbo nucifera HOM05D007253 ORTHO05D009055 4.8e-37 158.3 151 63.6
Cpa.g.sc148.44 Carica papaya HOM05D007253 ORTHO05D009055 1.1e-36 157.1 152 71.7
Atru.chr7.2576 Acer truncatum HOM05D007253 ORTHO05D009055 4.1e-36 155.2 154 64.9
Duzib168G0559 Durio zibethinus HOM05D007253 ORTHO05D009055 4.1e-36 155.2 137 73.7
Gorai.009G064300 Gossypium raimondii HOM05D007253 ORTHO05D009055 4.1e-36 155.2 151 69.5
Gohir.D05G063600 Gossypium hirsutum HOM05D007253 ORTHO05D009055 5.3e-36 154.8 151 68.2
CSS0046604 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 6.9e-36 154.5 149 65.8
CSS0050010 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 6.9e-36 154.5 149 65.8
Potri.006G266800 Populus trichocarpa HOM05D007253 ORTHO05D009055 6.9e-36 154.5 149 70.5
TAR626G1108 Trochodendron aralioides HOM05D007253 ORTHO05D009055 5.9e-35 151.4 147 63.3
BcaB06g28020 Brassica carinata HOM05D007253 ORTHO05D009055 7.7e-35 151.0 147 69.4
CSS0024958 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 7.7e-35 151.0 157 62.4
A04p19250 Brassica napus HOM05D007253 ORTHO05D009055 1.0e-34 150.6 149 67.8
BraA04t17525Z Brassica rapa HOM05D007253 ORTHO05D009055 1.0e-34 150.6 149 67.8
BolC4t27019H Brassica oleracea HOM05D007253 ORTHO05D009055 1.3e-34 150.2 151 68.9
CSS0026470 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 1.3e-34 150.2 142 65.5
RcHm_v2.0_Chr6g0299201 Rosa chinensis HOM05D007253 ORTHO05D009055 2.9e-34 149.1 149 65.8
THA.LOC104803610 Tarenaya hassleriana HOM05D007253 ORTHO05D009055 2.9e-34 149.1 149 66.4
BcaC02g08395 Brassica carinata HOM05D007253 ORTHO05D009055 3.8e-34 148.7 150 66.7
C04p54740 Brassica napus HOM05D007253 ORTHO05D009055 3.8e-34 148.7 150 66.7
FvH4_2g41340 Fragaria vesca HOM05D007253 ORTHO05D009055 3.8e-34 148.7 147 67.3
MD15G1043300 Malus domestica HOM05D007253 ORTHO05D009055 5.0e-34 148.3 147 66.7
Actinidia14140 Actinidia chinensis HOM05D007253 ORTHO05D009055 6.5e-34 147.9 145 64.8
Sc09g0010780 Simmondsia chinensis HOM05D007253 ORTHO05D009055 8.5e-34 147.5 149 65.8
GSVIVG01035999001 Vitis vinifera HOM05D007253 ORTHO05D009055 8.5e-34 147.5 106 86.8
Aa31LG7G11560 Aethionema arabicum HOM05D007253 ORTHO05D009055 1.1e-33 147.1 151 64.9
FAN27G1409 Fragaria x ananassa HOM05D007253 ORTHO05D009055 1.1e-33 147.1 147 66.7
CiPaw.07G233200 Carya illinoinensis HOM05D007253 ORTHO05D009055 1.9e-33 146.4 156 64.7
CANSAT35G1478 Cannabis sativa HOM05D007253 ORTHO05D009055 3.2e-33 145.6 155 62.6
AT2G24860 Arabidopsis thaliana HOM05D007253 ORTHO05D009055 4.2e-33 145.2 151 66.2
Thhalv10000367m.g Eutrema salsugineum HOM05D007253 ORTHO05D009055 7.2e-33 144.4 149 66.4
CARHR116800 Cardamine hirsuta HOM05D007253 ORTHO05D009055 9.4e-33 144.1 151 66.9
HanXRQChr13g0413301 Helianthus annuus HOM05D007253 ORTHO05D009055 9.4e-33 144.1 151 64.2
Cc08_g07700 Coffea canephora HOM05D007253 ORTHO05D009055 1.2e-32 143.7 129 71.3
Hund25608 Selenicereus undatus HOM05D007253 ORTHO05D009055 1.2e-32 143.7 149 61.7
FAN15G3156 Fragaria x ananassa HOM05D007253 ORTHO05D009055 2.1e-32 142.9 147 65.3
Sp4g03910 Schrenkiella parvula HOM05D007253 ORTHO05D009055 2.1e-32 142.9 152 65.8
AL4G15950 Arabidopsis lyrata HOM05D007253 ORTHO05D009055 6.1e-32 141.4 154 66.2
MELO3C016946.2 Cucumis melo HOM05D007253 ORTHO05D009055 7.9e-32 141.0 151 64.2
Eucgr.C04033 Eucalyptus grandis HOM05D007253 ORTHO05D009055 7.9e-32 141.0 153 68.0
Dinv03404 Davidia involucrata HOM05D007253 ORTHO05D009055 1.8e-31 139.8 151 62.9
CDE05G3047 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 2.3e-31 139.4 153 64.7
ATR0580G321 Amborella trichopoda HOM05D007253 ORTHO05D009055 3.0e-31 139.0 152 64.5
MBI14_g31385_MAGBIO Magnolia biondii HOM05D007253 ORTHO05D009055 3.0e-31 139.0 146 63.7
Sed0002011 Sechium edule HOM05D007253 ORTHO05D009055 3.0e-31 139.0 145 64.8
Carub.0004s0449 Capsella rubella HOM05D007253 ORTHO05D009055 5.1e-31 138.3 151 65.6
PGR044G0212 Punica granatum HOM05D007253 ORTHO05D009055 5.1e-31 138.3 161 66.5
Potri.018G016400 Populus trichocarpa HOM05D007253 ORTHO05D009055 6.7e-31 137.9 98 87.8
MD08G1052200 Malus domestica HOM05D007253 ORTHO05D009055 1.1e-30 137.1 114 60.5
ClCG05G016120 Citrullus lanatus HOM05D007253 ORTHO05D009055 1.5e-30 136.7 150 64.0
Nitab4.5_0005450g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 2.0e-30 136.3 149 61.7
TPR.G1881 Trifolium pratense HOM05D007253 ORTHO05D009055 2.0e-30 136.3 151 60.9
HPP92_010354 Vanilla planifolia HOM05D007253 ORTHO05D009055 2.0e-30 136.3 99 86.9
Nitab4.5_0000264g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 2.5e-30 136.0 151 61.6
Oeu023241.1 Olea europaea HOM05D007253 ORTHO05D009055 3.3e-30 135.6 141 67.4
Ah.12g060580 Amaranthus hybridus HOM05D007253 ORTHO05D009055 4.3e-30 135.2 149 59.1
Aqoxy7G03301 Aquilegia oxysepala HOM05D007253 ORTHO05D009055 5.7e-30 134.8 165 46.7
PSO063G6023 Papaver somniferum HOM05D007253 ORTHO05D009055 5.7e-30 134.8 154 61.0
ECA240G1715 Erigeron canadensis HOM05D001941 ORTHO05D002198 1.7e-29 133.3 98 82.7
EL10Ac2g02465 Beta vulgaris HOM05D007253 ORTHO05D009055 2.2e-29 132.9 149 61.7
Medtr3g105830 Medicago truncatula HOM05D007253 ORTHO05D009055 2.2e-29 132.9 149 63.1
Ah.00g238170 Amaranthus hybridus HOM05D007253 ORTHO05D009055 2.8e-29 132.5 103 76.7
Lj1g0002882 Lotus japonicus HOM05D007253 ORTHO05D009055 2.8e-29 132.5 154 60.4
Psat5g033080 Pisum sativum HOM05D007253 ORTHO05D009055 2.8e-29 132.5 149 62.4
SalBow8G5515 Salvia bowleyana HOM05D007253 ORTHO05D009055 2.8e-29 132.5 152 61.2
PSO782G0429 Papaver somniferum HOM05D007253 ORTHO05D009055 3.7e-29 132.1 154 59.7
SGA_v2.0_scaffold4G02163 Striga asiatica HOM05D007253 ORTHO05D009055 4.8e-29 131.7 122 69.7
Lsat_1_v5_gn_6_77860 Lactuca sativa HOM05D007253 ORTHO05D009055 1.1e-28 130.6 148 62.8
Phvul.009G086100 Phaseolus vulgaris HOM05D007253 ORTHO05D009055 1.1e-28 130.6 153 63.4
Os09g0423700 Oryza sativa ssp. japonica HOM05D007253 ORTHO05D009055 1.4e-28 130.2 99 77.8
Glyma.17G221800 Glycine max HOM05D007253 ORTHO05D009055 1.8e-28 129.8 148 62.2
DCAR_000661 Daucus carota HOM05D007253 ORTHO05D009055 2.4e-28 129.4 100 84.0
arahy.Tifrunner.gnm1.ann1.LF5WZD Arachis hypogaea HOM05D007253 ORTHO05D009055 4.1e-28 128.6 128 67.2
CDE02G4354 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 9.1e-28 127.5 93 88.2
Glyma.14G104200 Glycine max HOM05D007253 ORTHO05D009055 1.2e-27 127.1 148 61.5
Migut.E01444 Erythranthe guttata HOM05D007253 ORTHO05D009055 2.6e-27 125.9 121 71.1
CAN.G285.13 Capsicum annuum HOM05D007253 ORTHO05D009055 4.5e-27 125.2 150 58.0
Lalb_Chr23g0268151 Lupinus albus HOM05D007253 ORTHO05D009055 7.7e-27 124.4 101 76.2
vmacro05116 Vaccinium macrocarpon HOM05D007253 ORTHO05D009055 1.0e-26 124.0 136 64.7
MSTRG.13960 Avicennia marina HOM05D007253 ORTHO05D009055 1.7e-26 123.2 126 67.5
Glyma.06G060300 Glycine max HOM05D007253 ORTHO05D009055 1.7e-26 123.2 102 77.5
Zm00001eb313320 Zea mays HOM05D007253 ORTHO05D009055 2.2e-26 122.9 73 76.7
Glyma.04G059900 Glycine max HOM05D007253 ORTHO05D009055 3.8e-26 122.1 137 62.0
unitig_32.g11120 Utricularia gibba HOM05D007253 ORTHO05D009055 3.8e-26 122.1 96 80.2
arahy.Tifrunner.gnm1.ann1.G7TND8 Arachis hypogaea HOM05D007253 ORTHO05D009055 8.5e-26 120.9 152 57.9
Solyc08g006620.3 Solanum lycopersicum HOM05D007253 ORTHO05D009055 1.1e-25 120.6 153 56.2
Sopen08g002570 Solanum pennellii HOM05D007253 ORTHO05D009055 1.1e-25 120.6 101 70.3
arahy.Tifrunner.gnm1.ann1.2K72KI Arachis hypogaea HOM05D007253 ORTHO05D009055 3.2e-25 119.0 152 57.9
SEGI_37228 Sequoiadendron giganteum HOM05D007253 ORTHO05D009055 5.5e-25 118.2 94 75.5
AagrBONN_evm.TU.Sc2ySwM_117.2542 Anthoceros agrestis HOM05D007253 ORTHO05D009055 1.5e-22 110.2 99 70.7
Pp3c6_11160 Physcomitrium patens HOM05D007253 ORTHO05D009055 1.5e-22 110.2 95 71.6
TAR383G0216 Trochodendron aralioides HOM05D007253 ORTHO05D009055 7.4e-22 107.8 78 82.1
Peaxi162Scf00045g01937 Petunia axillaris HOM05D007253 ORTHO05D009055 1.8e-20 103.2 84 78.6
Mapoly0121s0030 Marchantia polymorpha HOM05D007253 ORTHO05D009055 2.6e-19 99.4 89 68.5
AUR62032436 Chenopodium quinoa HOM05D007253 ORTHO05D009055 2.9e-18 95.9 73 80.8
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 8.5e-18 94.4 73 78.1
SMO196G0205 Selaginella moellendorffii HOM05D007253 ORTHO05D009055 1.1e-17 94.0 81 70.4
Gohir.A05G061100 Gossypium hirsutum HOM05D007253 ORTHO05D009055 7.4e-14 81.3 91 54.9
Haze_21370 Corylus avellana HOM05D007253 ORTHO05D009055 1.2e-06 57.4 80 50.0
Cfa013009 Carpinus fangiana HOM05D018710 ORTHO05D009055 1.5e-06 57.0 81 49.4


User provided reference genes

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