Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 8.5e-20 99.4 50 100.0
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 3.7e-15 84.0 50 80.0
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 6.3e-15 83.2 48 85.4
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 6.3e-15 83.2 48 85.4
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 1.4e-14 82.0 43 93.0
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 2.4e-14 81.3 43 90.7
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 5.3e-14 80.1 43 88.4
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 2.6e-13 77.8 50 74.0
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 7.7e-13 76.3 48 75.0
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 1.3e-12 75.5 43 83.7
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.3e-12 75.5 42 83.3
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.7e-12 75.1 48 72.9
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.7e-12 75.1 42 88.1
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 2.9e-12 74.3 43 81.4
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 2.9e-12 74.3 43 83.7
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 5.0e-12 73.6 50 74.0
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 5.0e-12 73.6 48 70.8
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 5.0e-12 73.6 43 81.4
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 5.0e-12 73.6 50 74.0
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 5.0e-12 73.6 43 76.7
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 5.0e-12 73.6 45 82.2
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 5.0e-12 73.6 42 83.3
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 5.0e-12 73.6 42 83.3
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 8.5e-12 72.8 42 78.6
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 1.1e-11 72.4 51 70.6
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.9e-11 71.6 43 79.1
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 1.9e-11 71.6 45 80.0
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 4.2e-11 70.5 43 76.7
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 4.2e-11 70.5 43 76.7
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 5.5e-11 70.1 43 74.4
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 5.5e-11 70.1 42 78.6
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 7.2e-11 69.7 51 72.5
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 1.2e-10 68.9 52 69.2
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 1.2e-10 68.9 52 69.2
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 1.2e-10 68.9 52 69.2
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 1.2e-10 68.9 52 69.2
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 1.2e-10 68.9 46 69.6
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 1.2e-10 68.9 45 77.8
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 1.6e-10 68.6 42 76.2
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 2.7e-10 67.8 45 77.8
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 3.6e-10 67.4 51 68.6
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 4.7e-10 67.0 52 71.2
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 4.7e-10 67.0 46 63.0
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 6.1e-10 66.6 52 69.2
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 1.0e-09 65.9 42 71.4
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 1.4e-09 65.5 52 69.2
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 1.4e-09 65.5 44 79.5
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 1.8e-09 65.1 52 67.3
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 3.0e-09 64.3 44 72.7
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 3.0e-09 64.3 44 75.0
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.9e-09 63.9 48 66.7
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 3.9e-09 63.9 42 69.0
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 6.7e-09 63.2 48 64.6
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 8.8e-09 62.8 47 63.8
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 8.8e-09 62.8 44 77.3
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.3e-08 60.8 48 62.5
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 3.3e-08 60.8 52 63.5
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 3.3e-08 60.8 40 70.0
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.4e-08 60.5 48 62.5
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 4.4e-08 60.5 39 74.4
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 4.4e-08 60.5 44 72.7
Thhalv10005256m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 5.7e-08 60.1 39 74.4
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 9.7e-08 59.3 44 65.9
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 2.2e-07 58.2 41 63.4
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 2.8e-07 57.8 39 69.2
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 4.8e-07 57.0 60 53.3
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 4.8e-07 57.0 60 53.3
CSS0018794 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 6.3e-07 56.6 36 77.8
Mapoly0056s0140 Marchantia polymorpha HOM05D007824 ORTHO05D009875 1.4e-06 55.5 39 69.2
DCAR_000681 Daucus carota HOM05D007824 ORTHO05D009875 1.8e-06 55.1 40 72.5
Carub.0006s2284 Capsella rubella HOM05D007824 ORTHO05D009875 3.1e-06 54.3 39 66.7
Aa31LG11G4150 Aethionema arabicum HOM05D007824 ORTHO05D009875 4.1e-06 53.9 39 66.7
AL6G36640 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 5.3e-06 53.5 39 64.1
Solyc08g068930.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 5.3e-06 53.5 36 75.0
TPR.G38894 Trifolium pratense HOM05D007824 ORTHO05D009875 7.0e-06 53.1 35 71.4
AT5G24980 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 9.1e-06 52.8 36 66.7


User provided reference genes

Program Settings