Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 5.7e-59 230.7 117 100.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.8e-49 199.1 115 86.1
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.0e-33 144.1 120 65.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.0e-33 144.1 120 65.0
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 3.5e-32 141.7 110 67.3
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-30 136.0 125 63.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.0e-28 130.2 115 59.1
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.3e-28 129.0 114 61.4
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.0e-28 128.6 115 60.9
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 3.0e-28 128.6 114 61.4
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 5.2e-28 127.9 110 61.8
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 8.9e-28 127.1 116 53.4
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.0e-27 125.9 107 64.5
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 3.4e-27 125.2 115 62.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.3e-26 123.2 114 55.3
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-26 122.9 108 62.0
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.2e-26 122.5 117 58.1
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.9e-26 122.1 112 54.5
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 3.7e-26 121.7 112 51.8
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.3e-26 120.6 112 61.6
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 8.3e-26 120.6 110 55.5
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.1e-25 120.2 110 55.5
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.4e-25 119.8 105 59.0
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.4e-25 119.8 112 56.2
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-25 119.8 116 57.8
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.9e-25 119.4 116 52.6
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.4e-25 119.0 112 53.6
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.4e-25 119.0 112 60.7
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.4e-25 119.0 109 58.7
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 4.1e-25 118.2 83 68.7
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 4.1e-25 118.2 110 56.4
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.4e-25 117.9 115 54.8
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 9.2e-25 117.1 115 56.5
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.2e-24 116.7 111 55.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.2e-24 116.7 112 57.1
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.6e-24 116.3 111 55.9
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.6e-24 116.3 119 49.6
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.6e-24 116.3 111 54.1
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.0e-24 115.9 114 53.5
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-24 115.9 112 55.4
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.7e-24 115.5 115 54.8
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.7e-24 115.5 112 56.2
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 3.5e-24 115.2 115 54.8
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 6.0e-24 114.4 111 55.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 6.0e-24 114.4 117 53.0
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.8e-24 114.0 114 56.1
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 7.8e-24 114.0 119 51.3
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.8e-24 114.0 119 51.3
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.8e-24 114.0 113 54.0
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-23 113.2 119 51.3
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-23 112.8 116 48.3
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.3e-23 112.5 117 52.1
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.3e-23 112.5 116 53.4
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 5.0e-23 111.3 121 55.4
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.6e-23 110.9 121 49.6
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 6.6e-23 110.9 120 47.5
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 8.6e-23 110.5 115 50.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.1e-22 110.2 120 52.5
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.5e-22 109.8 113 49.6
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.5e-22 109.8 113 49.6
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.5e-22 109.0 114 52.6
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.6e-22 107.8 123 51.2
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.6e-22 107.8 123 51.2
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 5.6e-22 107.8 115 54.8
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.2e-21 106.7 112 52.7
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.2e-21 106.7 111 51.4
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-21 106.3 123 50.4
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-21 105.9 118 52.5
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.1e-21 105.9 111 50.5
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.8e-21 105.5 123 50.4
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 2.8e-21 105.5 118 52.5
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.8e-21 105.5 113 51.3
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 3.6e-21 105.1 118 50.0
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 6.2e-21 104.4 118 50.0
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.0e-21 104.0 111 50.5
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.1e-20 103.6 118 49.2
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.4e-20 103.2 118 51.7
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.3e-20 102.4 121 52.1
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.3e-20 102.4 115 50.4
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.3e-20 102.4 120 52.5
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.0e-20 101.7 109 51.4
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.2e-20 101.3 115 47.8
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.8e-20 100.9 107 58.9
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 8.9e-20 100.5 101 55.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 8.9e-20 100.5 122 49.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 8.9e-20 100.5 121 48.8
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 8.9e-20 100.5 125 47.2
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 8.9e-20 100.5 118 49.2
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.2e-19 100.1 117 52.1
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.5e-19 99.8 132 46.2
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 2.0e-19 99.4 126 46.0
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 4.4e-19 98.2 114 46.5
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 4.4e-19 98.2 115 49.6
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.5e-19 97.4 115 47.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.5e-19 97.4 115 47.0
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 9.8e-19 97.1 118 55.1
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.2e-18 95.9 117 56.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.9e-18 95.5 114 47.4
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 3.7e-18 95.1 113 47.8
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.9e-18 94.7 125 49.6
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 4.9e-18 94.7 120 48.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 8.3e-18 94.0 115 47.8
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.1e-17 93.6 117 44.4
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.2e-17 92.0 108 46.3
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 4.1e-17 91.7 112 49.1
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.4e-17 91.3 113 50.4
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 7.0e-17 90.9 112 50.0
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 9.2e-17 90.5 122 45.1
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 9.2e-17 90.5 117 46.2
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.1e-16 89.4 119 45.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 2.1e-16 89.4 119 45.4
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 3.5e-16 88.6 138 42.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.5e-16 88.6 124 44.4
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 4.6e-16 88.2 117 47.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 7.8e-16 87.4 119 43.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-15 86.7 99 52.5
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.7e-15 86.3 120 45.0
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.3e-15 85.9 129 44.2
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.3e-15 85.9 126 45.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.3e-15 85.9 89 53.9
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 3.0e-15 85.5 112 47.3
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.9e-15 85.1 119 44.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.9e-15 85.1 119 44.5
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 5.1e-15 84.7 119 46.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 5.1e-15 84.7 120 44.2
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.1e-14 83.6 119 43.7
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.9e-14 82.8 118 44.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 3.3e-14 82.0 121 42.1
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 4.3e-14 81.6 133 39.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.3e-14 80.9 99 50.5
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.1e-13 79.3 116 44.8
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.1e-13 79.3 132 38.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 3.6e-13 78.6 147 38.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 4.7e-13 78.2 114 45.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 4.7e-13 78.2 114 45.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.7e-13 78.2 114 45.6
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 6.2e-13 77.8 114 41.2
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.8e-12 76.3 114 44.7
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.8e-12 76.3 114 44.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.1e-12 75.5 129 38.0
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 4.0e-12 75.1 168 33.9
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.0e-12 75.1 113 42.5
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 6.8e-12 74.3 117 42.7
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.2e-11 73.6 101 44.6
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.0e-11 72.8 117 39.3
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.4e-11 72.0 141 39.0
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 3.4e-11 72.0 121 44.6
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 3.4e-11 72.0 130 40.8
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 4.4e-11 71.6 111 45.0
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 4.4e-11 71.6 125 38.4
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 5.8e-11 71.2 81 49.4
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 5.8e-11 71.2 81 49.4
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 7.5e-11 70.9 87 47.1
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 7.5e-11 70.9 96 47.9
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 9.9e-11 70.5 113 37.2
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 1.7e-10 69.7 97 41.2
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 2.2e-10 69.3 96 46.9
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.4e-09 65.9 118 38.1
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 3.2e-09 65.5 110 38.2
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 5.4e-09 64.7 159 28.9
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 1.2e-08 63.5 90 43.3
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 1.2e-08 63.5 100 42.0
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.5e-08 62.0 108 34.3
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 6.0e-08 61.2 121 39.7
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.7e-07 59.7 158 27.2
Atru.chr7.2644 Acer truncatum HOM05D001798 ORTHO05D005040 3.9e-07 58.5 120 39.2
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.6e-07 57.4 80 43.8
VMungo1143G0002 Vigna mungo HOM05D021496 ORTHO05D022761 8.6e-07 57.4 104 36.5
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 2.5e-06 55.8 104 41.3
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 3.3e-06 55.5 85 38.8
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 5.6e-06 54.7 105 36.2
Phvul.009G101400 Phaseolus vulgaris HOM05D021496 ORTHO05D022761 7.3e-06 54.3 90 41.1
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 9.5e-06 53.9 64 46.9


User provided reference genes

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