Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 8.7e-246 853.2 432 100.0
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 7.5e-141 504.6 476 60.5
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 3.0e-137 492.7 461 58.1
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 2.5e-136 489.6 504 56.7
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 3.3e-136 489.2 468 58.8
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 4.3e-136 488.8 465 58.5
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 3.6e-135 485.7 473 57.3
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.8e-134 483.4 454 57.5
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 4.4e-133 478.8 501 54.5
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 1.0e-129 467.6 458 58.1
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.7e-129 466.8 458 56.3
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 3.9e-129 465.7 499 53.9
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 8.7e-129 464.5 457 55.8
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.1e-128 464.2 500 52.2
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.5e-128 463.8 462 55.8
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 5.6e-128 461.8 459 57.1
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 2.8e-127 459.5 496 52.6
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 3.6e-127 459.1 500 52.0
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 1.1e-126 457.6 464 55.0
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.4e-126 457.2 462 55.2
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 1.4e-126 457.2 504 52.8
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 3.1e-126 456.1 504 53.2
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 5.3e-126 455.3 488 54.9
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 6.9e-126 454.9 462 55.0
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.2e-125 454.1 501 53.7
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.6e-125 453.0 496 51.6
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.8e-124 449.1 466 55.2
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 4.2e-123 445.7 467 54.6
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 5.4e-123 445.3 443 57.6
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 5.4e-123 445.3 463 53.3
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 1.6e-122 443.7 464 56.5
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 2.7e-122 443.0 496 52.8
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 3.5e-122 442.6 459 55.3
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.0e-121 441.0 467 53.5
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 1.7e-121 440.3 465 55.7
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.1e-120 437.6 453 54.1
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.5e-120 437.2 460 54.6
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 5.6e-120 435.3 484 54.8
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.6e-119 433.7 460 54.3
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.1e-119 433.3 456 55.0
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 4.8e-119 432.2 458 51.5
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.1e-118 429.5 457 54.3
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 4.5e-117 425.6 460 54.3
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 5.8e-117 425.2 480 51.0
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 5.8e-117 425.2 449 51.7
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.3e-116 424.1 457 53.2
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 1.6e-114 417.2 467 50.7
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 2.7e-114 416.4 458 52.4
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 4.6e-114 415.6 454 52.4
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 6.0e-114 415.2 455 51.4
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 1.0e-113 414.5 455 52.1
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.0e-113 414.5 452 51.8
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.0e-113 414.5 447 53.0
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.3e-113 414.1 482 51.2
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 3.0e-113 412.9 456 51.3
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 3.9e-113 412.5 458 51.3
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 3.9e-113 412.5 456 52.0
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 3.9e-113 412.5 447 51.7
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 4.3e-112 409.1 454 50.9
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.6e-111 407.1 447 52.3
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 2.1e-111 406.8 454 50.4
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 2.1e-111 406.8 454 51.3
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 8.1e-111 404.8 461 51.2
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 1.8e-110 403.7 457 50.3
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 6.9e-110 401.7 462 51.9
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.2e-109 401.0 472 50.4
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.0e-108 397.9 460 49.6
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.0e-108 397.9 457 53.2
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 1.7e-108 397.1 425 53.4
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 2.2e-108 396.7 455 49.7
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 2.2e-108 396.7 453 48.6
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 2.2e-108 396.7 425 53.2
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 2.9e-108 396.4 447 50.3
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 5.5e-107 392.1 475 49.9
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 2.7e-106 389.8 533 46.2
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 3.9e-105 386.0 462 48.5
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 5.1e-105 385.6 471 48.0
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 2.8e-103 379.8 465 46.5
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 2.6e-101 373.2 429 51.7
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 4.5e-101 372.5 455 44.8
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 9.3e-99 364.8 406 49.0
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 1.6e-98 364.0 487 44.6
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 6.7e-97 358.6 440 47.7
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 9.7e-96 354.8 383 52.0
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 1.1e-94 351.3 428 48.6
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 9.0e-94 348.2 433 47.1
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 1.4e-86 324.3 440 45.9
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.9e-84 316.6 338 54.1
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 6.5e-84 315.5 438 46.1
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 3.9e-81 306.2 396 44.7
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 3.7e-79 299.7 374 49.5
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 1.1e-75 288.1 442 42.3
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 3.0e-73 280.0 200 70.0
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 8.8e-73 278.5 456 38.2
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 1.1e-72 278.1 193 71.5
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 6.3e-71 272.3 263 54.8
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 7.7e-69 265.4 341 48.4
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 1.7e-68 264.2 203 65.5
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 3.4e-64 250.0 311 47.6
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 3.8e-60 236.5 241 52.7
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 2.0e-56 224.2 506 34.0
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 6.3e-55 219.2 426 35.2
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.3e-52 210.7 279 46.2
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 8.6e-52 208.8 124 82.3
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 3.7e-47 193.4 534 30.5
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.5e-43 181.4 124 72.6
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 8.9e-41 172.2 380 30.8
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 2.0e-40 171.0 262 39.3
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.3e-39 168.3 208 47.1
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 5.8e-32 142.9 171 43.3
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 3.3e-27 127.1 90 67.8
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 3.3e-27 127.1 69 87.0
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 7.3e-27 125.9 94 69.1
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 3.9e-20 103.6 141 46.1
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.3e-15 88.6 71 66.2
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 4.9e-15 86.7 136 40.4
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 3.0e-12 77.4 93 48.4
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 3.9e-12 77.0 54 70.4
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 6.6e-12 76.3 135 37.0
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 2.2e-07 61.2 52 57.7


User provided reference genes

Program Settings