Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 3.6e-31 137.5 64 100.0
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 2.9e-20 101.3 65 75.4
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 3.7e-20 100.9 63 81.0
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 3.5e-18 94.4 79 65.8
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 1.7e-17 92.0 68 69.1
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 2.3e-17 91.7 69 71.0
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 6.6e-17 90.1 68 66.2
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 8.6e-17 89.7 65 66.2
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 1.5e-16 89.0 63 69.8
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 1.9e-16 88.6 68 66.2
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 2.5e-16 88.2 66 65.2
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 2.5e-16 88.2 71 63.4
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 4.3e-16 87.4 70 62.9
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 4.3e-16 87.4 67 62.7
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 5.6e-16 87.0 67 70.1
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 5.6e-16 87.0 64 65.6
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 1.2e-15 85.9 67 62.7
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.6e-15 85.5 67 68.7
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 1.6e-15 85.5 65 66.2
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 1.6e-15 85.5 68 64.7
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 1.6e-15 85.5 68 69.1
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 2.1e-15 85.1 69 63.8
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 2.1e-15 85.1 71 62.0
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 2.8e-15 84.7 70 62.9
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 2.8e-15 84.7 76 61.8
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 3.6e-15 84.3 68 61.8
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 4.7e-15 84.0 68 60.3
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 4.7e-15 84.0 68 60.3
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 4.7e-15 84.0 68 60.3
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 4.7e-15 84.0 68 60.3
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 4.7e-15 84.0 69 63.8
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 6.2e-15 83.6 73 60.3
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 6.2e-15 83.6 68 63.2
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 6.2e-15 83.6 68 60.3
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 8.0e-15 83.2 71 56.3
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 1.4e-14 82.4 68 58.8
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 1.4e-14 82.4 69 62.3
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 1.8e-14 82.0 70 61.4
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 1.8e-14 82.0 71 60.6
Nn1g08434 Nelumbo nucifera HOM05D007771 ORTHO05D009850 2.3e-14 81.6 76 52.6
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 3.1e-14 81.3 69 60.9
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 6.8e-14 80.1 66 62.1
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 6.8e-14 80.1 67 61.2
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 6.8e-14 80.1 72 61.1
PGSC0003DMG400014434 Solanum tuberosum HOM05D007771 ORTHO05D009850 6.8e-14 80.1 56 62.5
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 4.4e-13 77.4 49 73.5
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 4.4e-13 77.4 47 74.5
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 4.4e-13 77.4 49 71.4
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 4.4e-13 77.4 47 72.3
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 4.4e-13 77.4 67 61.2
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 5.8e-13 77.0 71 53.5
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 7.5e-13 76.6 47 72.3
Gohir.A04G003000 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.3e-12 75.9 59 67.8
Gorai.009G453400 Gossypium raimondii HOM05D007771 ORTHO05D009850 1.3e-12 75.9 59 67.8
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 1.7e-12 75.5 68 57.4
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 1.7e-12 75.5 40 82.5
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 1.7e-12 75.5 47 72.3
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 2.2e-12 75.1 70 55.7
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 2.9e-12 74.7 47 70.2
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 2.9e-12 74.7 49 71.4
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 2.9e-12 74.7 49 71.4
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 2.9e-12 74.7 49 71.4
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 2.9e-12 74.7 49 71.4
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 3.7e-12 74.3 65 61.5
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 3.7e-12 74.3 47 72.3
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 4.9e-12 73.9 47 70.2
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 4.9e-12 73.9 71 53.5
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 1.1e-11 72.8 62 53.2
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 1.1e-11 72.8 47 72.3
HanXRQChr03g0077771 Helianthus annuus HOM05D007771 ORTHO05D009850 1.1e-11 72.8 62 59.7
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 1.1e-11 72.8 58 62.1
COL.COLO4_07761 Corchorus olitorius HOM05D007771 ORTHO05D009850 2.4e-11 71.6 55 63.6
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 3.2e-11 71.2 47 72.3
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 3.2e-11 71.2 70 54.3
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 4.1e-11 70.9 47 70.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 4.1e-11 70.9 47 70.2
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-10 69.3 47 68.1
HanXRQChr13g0409141 Helianthus annuus HOM05D007771 ORTHO05D009850 2.7e-10 68.2 69 52.2
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.6e-10 67.4 39 74.4
Carub.0001s4425 Capsella rubella HOM05D007771 ORTHO05D009850 6.0e-10 67.0 66 54.5
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 6.0e-10 67.0 74 51.4
Gohir.A13G130128 Gossypium hirsutum HOM05D007771 ORTHO05D009850 2.5e-08 61.6 62 46.8
HPP92_017988 Vanilla planifolia HOM05D007771 ORTHO05D009850 2.5e-08 61.6 66 50.0
Gohir.D13G133100 Gossypium hirsutum HOM05D007771 ORTHO05D009850 3.3e-08 61.2 62 45.2
Gorai.013G149400 Gossypium raimondii HOM05D007771 ORTHO05D009850 1.6e-07 58.9 62 45.2
Lalb_Chr04g0247701 Lupinus albus HOM05D007771 ORTHO05D009850 1.6e-07 58.9 43 60.5
Zm00001eb316200 Zea mays HOM05D007771 ORTHO05D009850 2.1e-07 58.5 66 45.5
EL10Ac4g09984 Beta vulgaris HOM05D007771 ORTHO05D009850 3.6e-07 57.8 36 72.2
DCAR_013772 Daucus carota HOM05D007771 ORTHO05D009850 3.6e-07 57.8 60 45.0
Os09g0480100 Oryza sativa ssp. japonica HOM05D007771 ORTHO05D009850 4.7e-07 57.4 65 41.5
HPP92_026702 Vanilla planifolia HOM05D007771 ORTHO05D009850 6.2e-07 57.0 66 47.0


User provided reference genes

Program Settings