Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.6e-178 628.6 318 100.0
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.5e-101 373.6 321 61.1
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 2.7e-87 326.2 377 50.4
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 3.5e-87 325.9 318 54.4
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 5.1e-86 322.0 321 52.6
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 9.6e-85 317.8 322 48.8
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.2e-82 310.8 315 51.4
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 4.5e-82 308.9 321 51.4
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 5.8e-82 308.5 311 51.8
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.1e-80 304.3 322 51.6
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.4e-80 303.9 294 56.1
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.4e-80 303.9 308 51.0
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.4e-80 303.9 308 51.0
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.9e-80 303.5 323 51.4
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.5e-80 303.1 308 50.6
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.5e-80 302.0 308 50.3
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.5e-80 302.0 308 50.3
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.1e-80 301.6 308 50.6
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 9.3e-80 301.2 337 51.0
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 6.0e-79 298.5 321 52.0
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 1.3e-78 297.4 309 52.8
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.1e-77 294.3 311 50.5
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 4.8e-76 288.9 321 50.5
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 3.1e-75 286.2 317 47.3
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.3e-73 280.8 310 49.7
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.9e-72 276.9 282 51.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.9e-72 276.9 280 50.7
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.9e-70 269.2 258 52.7
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.9e-70 269.2 316 47.2
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.7e-70 268.5 315 49.5
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.5e-69 266.5 311 47.6
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 3.3e-69 266.2 307 46.6
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.7e-68 263.8 304 48.4
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 6.3e-68 261.9 304 48.0
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 1.1e-67 261.2 270 50.0
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.1e-67 261.2 304 47.7
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 1.4e-67 260.8 338 43.5
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.4e-67 260.8 294 48.6
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 2.4e-67 260.0 293 47.8
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 4.1e-67 259.2 293 46.1
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 6.9e-67 258.5 276 50.4
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 6.9e-67 258.5 262 50.0
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 5.9e-66 255.4 303 46.5
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.0e-65 254.6 264 50.0
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 5.0e-65 252.3 237 54.4
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.9e-64 250.4 305 44.9
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 3.2e-64 249.6 238 52.9
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 4.2e-64 249.2 248 48.8
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 5.5e-64 248.8 265 50.9
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.2e-63 247.7 264 49.6
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.6e-63 247.3 264 49.6
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 3.6e-63 246.1 305 44.6
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 7.9e-63 245.0 315 45.1
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 2.3e-62 243.4 275 45.8
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.9e-62 242.7 260 47.7
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 2.0e-61 240.4 306 42.2
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.6e-61 240.0 290 45.2
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 3.3e-61 239.6 307 46.3
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 4.4e-61 239.2 261 46.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 4.4e-61 239.2 261 46.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 4.4e-61 239.2 261 46.0
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.3e-60 237.7 296 41.2
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 3.7e-60 236.1 289 45.3
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 4.8e-60 235.7 307 45.9
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 6.3e-60 235.3 307 45.9
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 6.3e-60 235.3 264 46.6
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.1e-59 234.6 260 48.1
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 3.1e-59 233.0 291 44.7
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 4.1e-59 232.6 290 43.8
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.0e-59 231.9 276 44.6
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.2e-58 231.1 303 43.6
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.2e-58 231.1 254 46.5
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.5e-58 230.7 262 46.6
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 4.5e-58 229.2 261 44.4
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 7.7e-58 228.4 260 45.8
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.7e-57 227.3 311 42.4
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.7e-57 227.3 248 47.2
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.5e-56 223.4 249 45.8
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-56 222.6 254 49.2
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-56 221.9 248 49.2
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.4e-56 221.5 258 47.7
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-54 218.0 248 48.8
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-54 218.0 248 48.8
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-54 218.0 248 48.8
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 1.4e-54 217.6 263 43.3
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-54 217.2 248 48.4
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-54 217.2 248 48.4
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-54 217.2 248 48.8
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.3e-54 216.9 248 48.4
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 3.0e-54 216.5 256 45.3
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-54 216.1 248 48.4
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 6.7e-54 215.3 263 43.0
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 6.7e-54 215.3 264 41.3
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-53 214.5 248 48.8
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.1e-53 214.5 291 42.6
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 7.4e-53 211.8 264 45.8
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 8.2e-52 208.4 239 44.8
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.4e-51 206.8 310 41.6
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.0e-49 201.4 271 45.0
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 2.2e-49 200.3 298 43.3
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 6.5e-49 198.7 190 52.1
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 1.9e-48 197.2 309 41.1
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.9e-48 197.2 304 41.4
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.5e-48 196.8 270 43.0
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 2.5e-48 196.8 299 41.8
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 5.5e-48 195.7 303 39.9
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.6e-47 194.1 275 42.5
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 2.1e-47 193.7 303 40.6
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 6.1e-47 192.2 305 40.3
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.1e-47 192.2 230 47.4
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.8e-46 190.7 273 42.9
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.8e-46 190.7 273 42.9
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 3.0e-46 189.9 277 43.0
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 5.2e-46 189.1 314 39.8
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 6.7e-46 188.7 273 42.9
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 2.6e-45 186.8 239 44.8
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.0e-42 177.2 243 40.7
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 7.7e-42 175.3 217 50.7
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.5e-40 171.0 275 38.5
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 7.2e-40 168.7 155 57.4
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.7e-39 166.8 244 38.9
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-39 166.0 183 48.1
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.8e-38 164.1 253 40.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.3e-38 163.7 295 35.6
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.3e-38 163.7 251 37.5
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-38 163.3 202 46.5
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-37 161.4 168 50.6
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.2e-37 161.4 244 38.9
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.8e-37 158.3 168 50.0
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.8e-36 156.0 263 37.3
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.7e-34 150.2 199 40.7
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 7.7e-34 148.7 248 39.1
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.3e-30 137.1 144 47.9
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-30 136.3 162 48.1
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.4e-27 125.9 136 50.0
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.9e-26 122.5 125 52.8
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 4.7e-23 112.8 199 33.7
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 6.4e-20 102.4 234 31.2
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 7.0e-19 99.0 102 48.0
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 2.7e-18 97.1 201 33.3
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 9.5e-16 88.6 196 32.1
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 2.9e-12 77.0 89 39.3
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 3.5e-10 70.1 76 42.1
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.0e-10 69.3 88 46.6
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 3.0e-09 67.0 151 29.8
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.5e-08 62.0 81 44.4


User provided reference genes

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