Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1896.7 935 100.0
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1489.9 954 79.9
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1347.4 944 72.5
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1345.5 945 73.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1345.5 940 72.9
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1336.2 940 72.0
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1336.2 956 71.8
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1325.1 938 71.4
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1315.4 938 71.3
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1305.8 995 68.6
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1305.4 949 70.5
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1287.7 949 69.3
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1282.7 947 70.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1281.5 947 70.1
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1280.0 945 69.9
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1278.8 937 69.5
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1275.4 933 70.1
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1273.5 943 68.6
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1271.1 1021 65.7
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1270.4 941 69.8
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1263.1 932 69.6
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1261.9 940 68.9
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1261.9 945 69.4
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1259.6 948 69.0
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1256.9 946 68.8
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1249.2 924 68.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1245.0 953 67.5
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1239.9 942 66.6
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1237.2 949 67.7
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1230.7 931 68.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1227.6 931 68.2
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1227.6 932 68.0
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1226.5 939 68.2
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1225.3 936 67.8
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1224.2 940 67.0
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1223.4 932 67.2
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1221.1 938 67.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1220.7 1066 61.5
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1216.4 973 65.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1215.7 953 66.2
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1215.3 951 65.7
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1209.5 925 67.0
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1208.0 1055 62.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1203.3 917 67.3
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1196.0 939 65.6
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1195.6 922 66.4
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1193.7 884 68.2
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1193.7 928 66.7
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1189.9 1022 62.1
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1186.4 929 65.3
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1184.5 955 64.7
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1184.5 922 66.4
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1184.5 943 64.2
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1182.9 942 64.1
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1177.9 949 64.1
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1177.9 932 65.3
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1174.1 950 63.5
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1173.7 953 65.0
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1173.3 949 64.0
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1172.1 933 65.0
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1170.2 870 69.3
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1168.7 1017 60.8
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1164.1 949 63.4
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 953 62.4
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1161.0 950 63.1
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1160.6 935 63.6
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1159.8 977 62.7
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1158.7 1021 60.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 951 63.1
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 953 63.0
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1157.9 959 63.4
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1156.7 1020 60.1
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1156.7 956 62.4
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1151.0 940 64.1
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1149.8 831 70.4
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1149.0 951 62.8
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1149.0 951 62.8
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 997 61.6
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1135.9 938 62.3
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 936 62.5
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 935 61.8
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 932 63.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1119.4 953 61.7
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 976 60.6
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1110.9 931 62.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1110.9 931 62.3
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 947 60.8
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 970 61.6
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1105.9 932 61.5
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 857 67.1
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1099.0 861 67.9
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1095.1 972 59.1
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 939 61.9
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1088.9 932 61.8
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1082.8 932 60.4
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 1060 55.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 899 64.4
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 899 63.5
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.7e-310 1068.1 965 58.2
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 9.1e-309 1063.5 941 60.4
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.0e-307 1060.1 936 59.0
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.5e-306 1056.2 860 63.8
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.4e-304 1049.7 927 59.7
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 4.4e-303 1044.6 1175 50.6
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.7e-302 1042.7 959 58.9
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 8.6e-299 1030.4 965 58.4
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 1.2e-297 1026.5 938 57.7
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.6e-295 1018.8 1048 54.6
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.6e-292 1009.6 978 55.7
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 5.6e-290 1001.1 816 63.6
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.0e-288 996.9 946 56.3
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 3.2e-269 932.2 781 63.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.1e-266 923.7 927 54.6
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.2e-260 903.7 695 68.6
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.5e-258 896.7 950 53.4
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 4.4e-255 885.2 771 59.1
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 3.8e-254 882.1 946 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.9e-246 855.9 878 51.7
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.8e-243 846.7 847 53.4
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.2e-237 825.9 1117 42.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 9.0e-224 781.2 720 58.5
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.2e-209 733.4 921 48.2
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 6.1e-204 715.3 624 60.4
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 8.2e-201 704.9 672 58.6
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.0e-195 688.0 759 51.8
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.5e-189 666.8 411 78.3
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.0e-158 563.5 354 78.0
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.9e-157 560.8 400 71.5
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 2.1e-156 557.4 514 59.9
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 4.9e-153 546.2 387 71.3
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.7e-143 513.8 714 44.5
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 2.8e-140 503.8 621 48.6
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.4e-129 466.1 475 55.4
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.1e-128 462.6 559 51.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.0e-122 444.5 299 71.9
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 3.2e-120 437.2 282 75.2
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 6.9e-115 419.5 292 69.9
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.3e-110 404.4 323 62.8
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 5.3e-99 366.7 224 81.2
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.4e-98 364.0 340 52.9
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 4.6e-58 230.7 151 75.5
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.9e-52 211.5 146 67.1
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 5.0e-49 200.7 141 70.9
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.6e-49 200.3 214 52.3
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 7.1e-43 180.3 135 70.4
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.5e-40 172.6 285 42.8
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 7.8e-34 150.2 106 67.0
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.1e-30 139.8 161 48.4
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.3e-28 132.9 76 81.6
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.6e-26 125.9 112 58.9
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 6.2e-23 114.0 88 55.7
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 4.9e-20 104.4 66 75.8
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 6.0e-18 97.4 57 84.2
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.3e-17 96.3 275 31.3
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 2.3e-17 95.5 161 39.1
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.8e-15 88.6 52 78.8
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.6e-13 82.0 82 54.9
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.9e-11 75.9 165 30.9
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 3.0e-09 68.6 68 48.5
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 8.7e-09 67.0 53 56.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 8.7e-09 67.0 53 56.6
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 2.5e-08 65.5 53 54.7
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.5e-08 65.5 62 53.2
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.3e-08 65.1 51 64.7
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 9.6e-08 63.5 146 33.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.2e-07 60.8 79 49.4
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 8.2e-07 60.5 52 59.6
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.1e-06 60.1 33 69.7
Medtr1g105770 Medicago truncatula HOM05D004101 ORTHO05D005221 5.3e-06 57.8 70 47.1


User provided reference genes

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