Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G220960 Manihot esculenta HOM05D003206 ORTHO05D014283 4.8e-42 174.1 88 100.0
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 8.4e-23 110.2 59 93.2
Manes.11G060045 Manihot esculenta HOM05D003206 ORTHO05D005207 1.4e-22 109.4 59 93.2
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 1.5e-19 99.4 59 79.7
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 9.7e-19 96.7 59 78.0
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 2.2e-18 95.5 59 78.0
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 3.7e-18 94.7 59 78.0
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 6.3e-18 94.0 59 71.2
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 8.2e-18 93.6 59 76.3
Atru.chr1.2869 Acer truncatum HOM05D003206 ORTHO05D014283 5.3e-17 90.9 59 72.9
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 5.3e-17 90.9 59 69.5
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 1.2e-16 89.7 59 69.5
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 1.2e-16 89.7 59 69.5
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 3.4e-16 88.2 59 71.2
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 4.5e-16 87.8 59 72.9
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 4.5e-16 87.8 59 72.9
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 4.5e-16 87.8 59 72.9
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 4.5e-16 87.8 59 72.9
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 4.5e-16 87.8 59 72.9
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 5.9e-16 87.4 59 72.9
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.7e-16 87.0 59 72.9
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 7.7e-16 87.0 59 69.5
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 1.0e-15 86.7 59 69.5
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 1.0e-15 86.7 59 66.1
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 1.0e-15 86.7 59 67.8
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 1.3e-15 86.3 59 69.5
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 1.3e-15 86.3 59 66.1
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 1.3e-15 86.3 59 67.8
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 1.3e-15 86.3 59 67.8
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 69.5
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 69.5
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 69.5
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 69.5
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 69.5
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 69.5
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 67.8
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 62.7
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 1.7e-15 85.9 59 66.1
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 2.9e-15 85.1 59 64.4
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 2.9e-15 85.1 59 67.8
Manes.02G220810 Manihot esculenta HOM05D003206 ORTHO05D014283 2.9e-15 85.1 92 55.4
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 3.8e-15 84.7 59 67.8
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 3.8e-15 84.7 60 70.0
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 5.0e-15 84.3 59 67.8
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 5.0e-15 84.3 59 69.5
Haze_16588 Corylus avellana HOM05D003206 ORTHO05D014283 6.5e-15 84.0 59 67.8
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 8.5e-15 83.6 59 66.1
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 8.5e-15 83.6 59 66.1
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 8.5e-15 83.6 59 67.8
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 1.1e-14 83.2 59 67.8
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 1.1e-14 83.2 59 64.4
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 1.1e-14 83.2 59 66.1
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 1.4e-14 82.8 59 67.8
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 1.4e-14 82.8 59 62.7
BcaC08g47591 Brassica carinata HOM05D003206 ORTHO05D014283 1.4e-14 82.8 59 66.1
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 1.4e-14 82.8 59 66.1
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 1.4e-14 82.8 59 66.1
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 1.4e-14 82.8 59 66.1
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 1.4e-14 82.8 59 66.1
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 1.9e-14 82.4 59 62.7
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.9e-14 82.4 59 62.7
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.9e-14 82.4 59 62.7
Glyma.08G214200 Glycine max HOM05D003206 ORTHO05D014283 1.9e-14 82.4 59 62.7
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 1.9e-14 82.4 59 64.4
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 1.9e-14 82.4 59 64.4
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 2.5e-14 82.0 59 64.4
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 2.5e-14 82.0 59 66.1
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 2.5e-14 82.0 59 64.4
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 3.2e-14 81.6 59 66.1
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 3.2e-14 81.6 59 64.4
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 3.2e-14 81.6 59 64.4
Oeu004210.1 Olea europaea HOM05D003206 ORTHO05D005207 3.2e-14 81.6 59 64.4
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 3.2e-14 81.6 59 64.4
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 3.2e-14 81.6 59 64.4
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 4.2e-14 81.3 59 66.1
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 4.2e-14 81.3 59 62.7
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.2e-14 81.3 59 64.4
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 4.2e-14 81.3 58 63.8
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 4.2e-14 81.3 59 61.0
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 4.2e-14 81.3 57 64.9
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 5.5e-14 80.9 59 64.4
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 5.5e-14 80.9 59 64.4
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 5.5e-14 80.9 59 59.3
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 7.2e-14 80.5 59 62.7
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 7.2e-14 80.5 59 62.7
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 7.2e-14 80.5 59 62.7
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 7.2e-14 80.5 59 66.1
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 9.4e-14 80.1 59 62.7
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 9.4e-14 80.1 59 62.7
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 9.4e-14 80.1 59 62.7
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 9.4e-14 80.1 59 62.7
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 1.2e-13 79.7 59 64.4
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 1.2e-13 79.7 59 64.4
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.2e-13 79.7 59 64.4
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 1.2e-13 79.7 59 64.4
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 1.2e-13 79.7 59 66.1
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 1.2e-13 79.7 59 62.7
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 1.2e-13 79.7 59 64.4
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.6e-13 79.3 57 66.7
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 1.6e-13 79.3 59 61.0
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 1.6e-13 79.3 59 61.0
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 1.6e-13 79.3 58 65.5
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 2.1e-13 79.0 59 62.7
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 2.1e-13 79.0 59 64.4
GSVIVG01017394001 Vitis vinifera HOM05D003206 ORTHO05D014283 2.1e-13 79.0 59 66.1
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 2.1e-13 79.0 59 66.1
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 2.7e-13 78.6 59 61.0
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 2.7e-13 78.6 59 62.7
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 2.7e-13 78.6 59 66.1
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 3.6e-13 78.2 59 61.0
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 3.6e-13 78.2 59 62.7
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 3.6e-13 78.2 58 63.8
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 4.6e-13 77.8 61 62.3
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 4.6e-13 77.8 56 60.7
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 4.6e-13 77.8 59 66.1
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 6.1e-13 77.4 59 59.3
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 1.0e-12 76.6 59 61.0
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 1.0e-12 76.6 59 57.6
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 1.4e-12 76.3 59 59.3
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 1.4e-12 76.3 59 59.3
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 1.4e-12 76.3 59 59.3
Cfa021276 Carpinus fangiana HOM05D003206 ORTHO05D014283 1.8e-12 75.9 59 61.0
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 1.8e-12 75.9 59 55.9
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 1.8e-12 75.9 59 59.3
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 2.3e-12 75.5 59 61.0
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 3.0e-12 75.1 59 61.0
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 3.9e-12 74.7 59 55.9
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 3.9e-12 74.7 59 59.3
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.9e-12 74.7 59 59.3
Haze_16591 Corylus avellana HOM05D003206 ORTHO05D014283 5.1e-12 74.3 59 61.0
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 6.7e-12 73.9 59 62.7
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 6.7e-12 73.9 59 59.3
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 2.0e-11 72.4 59 55.9
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 2.0e-11 72.4 59 64.4
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 2.5e-11 72.0 57 57.9
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 2.5e-11 72.0 57 57.9
Cfa012491 Carpinus fangiana HOM05D003206 ORTHO05D014283 2.5e-11 72.0 57 57.9
CSS0035908 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D014283 3.3e-11 71.6 59 55.9
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 3.3e-11 71.6 58 56.9
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 7.4e-11 70.5 59 52.5
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 9.7e-11 70.1 59 54.2
Hma1.2p1_0017F.1_g011400 Hydrangea macrophylla HOM05D003206 ORTHO05D014283 1.7e-10 69.3 55 58.2
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 2.2e-10 68.9 59 55.9
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 3.7e-10 68.2 57 52.6
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 8.2e-10 67.0 59 55.9
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 1.4e-09 66.2 59 54.2
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 1.4e-09 66.2 59 54.2
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 6.9e-09 63.9 57 57.9
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 7.7e-08 60.5 57 54.4
PSO478G0299 Papaver somniferum HOM05D003206 ORTHO05D005207 7.7e-08 60.5 58 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 2.9e-07 58.5 58 50.0
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.5e-06 55.5 41 56.1
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 5.5e-06 54.3 59 45.8
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 9.4e-06 53.5 57 47.4


User provided reference genes

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