Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G220810 Manihot esculenta HOM05D003206 ORTHO05D014283 2.1e-49 198.7 103 100.0
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 3.3e-18 95.1 56 83.9
Manes.11G060045 Manihot esculenta HOM05D003206 ORTHO05D005207 1.3e-17 93.2 56 82.1
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 4.8e-17 91.3 55 81.8
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 6.2e-17 90.9 54 83.3
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 1.4e-16 89.7 56 76.8
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 1.4e-16 89.7 55 80.0
Atru.chr1.2869 Acer truncatum HOM05D003206 ORTHO05D014283 2.4e-16 89.0 50 90.0
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 3.1e-16 88.6 56 76.8
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 1.5e-15 86.3 56 76.8
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 2.0e-15 85.9 56 75.0
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 2.0e-15 85.9 50 84.0
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 2.6e-15 85.5 56 75.0
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 2.6e-15 85.5 56 73.2
Manes.02G220960 Manihot esculenta HOM05D003206 ORTHO05D014283 7.6e-15 84.0 92 55.4
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 9.9e-15 83.6 55 72.7
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 9.9e-15 83.6 71 60.6
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 9.9e-15 83.6 50 80.0
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 9.9e-15 83.6 51 78.4
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 1.3e-14 83.2 62 71.0
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 1.3e-14 83.2 55 72.7
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 2.9e-14 82.0 56 69.6
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 3.8e-14 81.6 52 76.9
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 3.8e-14 81.6 48 79.2
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 4.9e-14 81.3 71 57.7
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 4.9e-14 81.3 71 57.7
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 4.9e-14 81.3 71 57.7
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 4.9e-14 81.3 71 57.7
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 4.9e-14 81.3 51 80.4
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.9e-14 81.3 55 70.9
GSVIVG01017394001 Vitis vinifera HOM05D003206 ORTHO05D014283 4.9e-14 81.3 55 74.5
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 4.9e-14 81.3 55 74.5
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 6.4e-14 80.9 55 72.7
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 6.4e-14 80.9 55 72.7
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 6.4e-14 80.9 55 72.7
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 6.4e-14 80.9 55 72.7
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.4e-14 80.9 55 72.7
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.4e-14 80.9 55 72.7
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.4e-14 80.9 55 72.7
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.4e-14 80.9 55 72.7
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 6.4e-14 80.9 56 69.6
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 6.4e-14 80.9 52 78.8
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 8.4e-14 80.5 52 75.0
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 8.4e-14 80.5 52 75.0
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 8.4e-14 80.5 56 71.4
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 8.4e-14 80.5 55 70.9
Haze_16588 Corylus avellana HOM05D003206 ORTHO05D014283 8.4e-14 80.5 50 80.0
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 8.4e-14 80.5 55 72.7
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 8.4e-14 80.5 51 76.5
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 8.4e-14 80.5 52 75.0
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 1.1e-13 80.1 56 69.6
BcaC08g47591 Brassica carinata HOM05D003206 ORTHO05D014283 1.1e-13 80.1 71 56.3
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-13 80.1 71 56.3
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-13 80.1 71 56.3
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-13 80.1 71 56.3
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 1.1e-13 80.1 71 56.3
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 1.1e-13 80.1 71 56.3
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 1.1e-13 80.1 71 56.3
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.1e-13 80.1 49 77.6
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 1.1e-13 80.1 56 69.6
Oeu004210.1 Olea europaea HOM05D003206 ORTHO05D005207 1.1e-13 80.1 55 67.3
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 1.4e-13 79.7 56 66.1
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 1.4e-13 79.7 56 66.1
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 1.4e-13 79.7 55 70.9
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 1.9e-13 79.3 52 75.0
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 1.9e-13 79.3 52 75.0
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 1.9e-13 79.3 55 70.9
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 1.9e-13 79.3 52 73.1
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 1.9e-13 79.3 52 73.1
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 1.9e-13 79.3 48 81.2
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 1.9e-13 79.3 55 70.9
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 1.9e-13 79.3 50 80.0
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 1.9e-13 79.3 50 78.0
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 2.4e-13 79.0 71 54.9
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 2.4e-13 79.0 71 54.9
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 2.4e-13 79.0 52 76.9
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 2.4e-13 79.0 56 67.9
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 2.4e-13 79.0 52 75.0
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 2.4e-13 79.0 71 60.6
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 2.4e-13 79.0 56 67.9
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 3.2e-13 78.6 55 69.1
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 3.2e-13 78.6 55 67.3
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 3.2e-13 78.6 56 66.1
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.2e-13 78.6 55 69.1
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.2e-13 78.2 55 70.9
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 4.2e-13 78.2 55 70.9
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 4.2e-13 78.2 55 70.9
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 4.2e-13 78.2 56 66.1
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 4.2e-13 78.2 56 71.4
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 5.4e-13 77.8 56 67.9
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 5.4e-13 77.8 56 69.6
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 7.1e-13 77.4 56 66.1
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 7.1e-13 77.4 70 55.7
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 7.1e-13 77.4 56 66.1
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 9.3e-13 77.0 71 54.9
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 9.3e-13 77.0 71 54.9
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 1.2e-12 76.6 70 55.7
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 1.2e-12 76.6 56 66.1
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 1.2e-12 76.6 52 71.2
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 1.6e-12 76.3 55 67.3
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 1.6e-12 76.3 56 71.4
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 1.6e-12 76.3 56 69.6
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 1.6e-12 76.3 56 69.6
Aqoxy133s001 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 3.5e-12 75.1 52 73.1
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 3.5e-12 75.1 52 73.1
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 3.5e-12 75.1 63 69.8
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 3.5e-12 75.1 55 65.5
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 3.5e-12 75.1 55 65.5
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 3.5e-12 75.1 56 64.3
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 4.6e-12 74.7 56 69.6
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 6.0e-12 74.3 52 69.2
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 6.0e-12 74.3 71 52.1
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 6.0e-12 74.3 53 64.2
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 6.0e-12 74.3 53 69.8
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 6.0e-12 74.3 56 67.9
Hma1.2p1_0017F.1_g011400 Hydrangea macrophylla HOM05D003206 ORTHO05D014283 7.8e-12 73.9 46 73.9
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 1.0e-11 73.6 48 72.9
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 1.0e-11 73.6 53 64.2
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 1.0e-11 73.6 48 75.0
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 1.3e-11 73.2 56 66.1
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 1.7e-11 72.8 51 72.5
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 1.7e-11 72.8 53 67.9
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 1.7e-11 72.8 56 62.5
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 1.7e-11 72.8 52 69.2
Cfa021276 Carpinus fangiana HOM05D003206 ORTHO05D014283 3.9e-11 71.6 45 77.8
Glyma.08G214200 Glycine max HOM05D003206 ORTHO05D014283 3.9e-11 71.6 52 63.5
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 3.9e-11 71.6 66 56.1
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 3.9e-11 71.6 66 54.5
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 3.9e-11 71.6 53 66.0
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 5.1e-11 71.2 55 61.8
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 6.6e-11 70.9 52 65.4
Haze_16591 Corylus avellana HOM05D003206 ORTHO05D014283 6.6e-11 70.9 50 70.0
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 6.6e-11 70.9 52 67.3
CSS0035908 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D014283 8.7e-11 70.5 49 67.3
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 8.7e-11 70.5 56 62.5
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 8.7e-11 70.5 56 62.5
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.1e-10 70.1 52 63.5
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 1.1e-10 70.1 60 60.0
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 1.5e-10 69.7 55 67.3
Cfa012491 Carpinus fangiana HOM05D003206 ORTHO05D014283 1.9e-10 69.3 51 68.6
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 1.9e-10 69.3 55 60.0
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 1.9e-10 69.3 45 75.6
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 2.5e-10 68.9 50 66.0
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 2.5e-10 68.9 56 58.9
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 2.5e-10 68.9 45 71.1
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 5.6e-10 67.8 47 63.8
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 7.3e-10 67.4 47 70.2
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 9.6e-10 67.0 52 63.5
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 1.3e-09 66.6 52 61.5
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 1.6e-09 66.2 46 71.7
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 2.1e-09 65.9 56 60.7
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 2.8e-09 65.5 45 71.1
PSO063G0253 Papaver somniferum HOM05D003206 ORTHO05D016781 4.8e-09 64.7 55 56.4
unitig_27.g24952 Utricularia gibba HOM05D003206 ORTHO05D002964 4.8e-09 64.7 46 67.4
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 6.2e-09 64.3 52 59.6
PSO478G0299 Papaver somniferum HOM05D003206 ORTHO05D005207 8.1e-09 63.9 51 60.8
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 2.4e-08 62.4 48 62.5
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 2.4e-08 62.4 48 62.5
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 5.3e-08 61.2 52 59.6
arahy.Tifrunner.gnm1.ann1.GS37TA Arachis hypogaea HOM05D003206 ORTHO05D005207 1.5e-07 59.7 42 66.7
Manes.11G080700 Manihot esculenta HOM05D003206 ORTHO05D014283 3.4e-07 58.5 38 76.3
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 9.9e-07 57.0 50 54.0
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 1.7e-06 56.2 48 54.2
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 1.7e-06 56.2 48 54.2


User provided reference genes

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