Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.8e-87 325.9 164 100.0
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.8e-71 272.7 164 81.1
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.8e-71 272.7 164 81.1
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 5.3e-71 271.2 164 81.7
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 9.1e-71 270.4 166 78.3
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 1.2e-70 270.0 164 79.9
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.6e-70 269.6 164 79.9
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.0e-70 269.2 164 81.7
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 2.0e-70 269.2 164 79.9
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.6e-70 268.9 164 79.9
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 2.6e-70 268.9 164 81.1
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.5e-70 268.5 164 81.1
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 3.5e-70 268.5 164 78.0
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 4.5e-70 268.1 164 79.3
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 5.9e-70 267.7 164 77.4
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 5.9e-70 267.7 166 77.7
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 5.9e-70 267.7 164 77.4
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 7.7e-70 267.3 164 78.0
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 1.3e-69 266.5 164 77.4
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.7e-69 266.2 164 79.3
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 3.8e-69 265.0 166 77.1
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 3.8e-69 265.0 164 78.0
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 5.0e-69 264.6 164 78.7
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 5.0e-69 264.6 164 78.0
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 1.1e-68 263.5 164 76.2
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 1.1e-68 263.5 164 76.2
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.1e-68 263.5 164 77.4
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 1.1e-68 263.5 164 79.3
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 1.5e-68 263.1 164 76.2
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 1.5e-68 263.1 164 78.0
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 1.9e-68 262.7 164 76.8
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.9e-68 262.7 164 76.2
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.9e-68 262.7 164 76.2
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.5e-68 262.3 164 77.4
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 3.2e-68 261.9 164 76.2
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 77.4
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 76.2
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 5.5e-68 261.2 164 75.6
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 5.5e-68 261.2 164 75.6
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 7.2e-68 260.8 164 76.8
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 7.2e-68 260.8 164 77.4
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 9.4e-68 260.4 164 75.6
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 1.2e-67 260.0 164 78.7
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 1.6e-67 259.6 164 75.6
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 74.4
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 74.4
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 75.0
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 4.7e-67 258.1 164 75.0
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 74.4
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 74.4
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 73.8
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 73.8
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 75.6
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.8e-66 256.1 164 76.2
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.8e-66 256.1 164 71.3
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 73.8
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 73.2
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 75.0
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 74.4
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 74.4
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 73.2
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 4.0e-66 255.0 162 73.5
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 73.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 5.2e-66 254.6 157 77.7
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 71.3
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 75.0
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 75.0
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 75.0
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 73.8
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 74.4
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 2.6e-65 252.3 188 69.1
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 73.2
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 72.6
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 73.2
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 4.4e-65 251.5 173 69.4
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 7.5e-65 250.8 164 73.8
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 1.3e-64 250.0 158 75.9
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.7e-64 249.6 164 72.6
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 70.7
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 71.3
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 73.8
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 70.1
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.8e-63 246.1 193 64.2
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 75.0
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 69.5
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 5.3e-63 244.6 185 65.4
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 73.2
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 5.3e-63 244.6 156 73.1
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 71.3
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 72.0
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 69.5
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 5.9e-62 241.1 191 62.8
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 69.5
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 5.0e-61 238.0 164 68.3
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 66.5
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 69.5
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 68.3
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 66.5
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 68.3
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 3.0e-58 228.8 164 64.6
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 1.7e-56 223.0 174 63.2
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 2.8e-56 222.2 164 66.5
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.7e-53 213.0 171 61.4
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.3e-53 212.6 164 61.6
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 8.6e-53 210.7 164 58.5
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.9e-52 209.5 162 58.6
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 7.2e-52 207.6 133 73.7
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 4.9e-48 194.9 164 61.6
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.1e-47 193.7 165 61.2
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 9.2e-47 190.7 221 51.6
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.7e-46 189.1 170 57.1
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.7e-46 189.1 170 57.1
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.7e-45 186.4 164 51.8
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 1.9e-44 183.0 167 58.1
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.1e-43 179.5 132 64.4
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 1.8e-39 166.4 117 69.2
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 4.1e-39 165.2 168 47.6
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.6e-38 163.3 96 84.4
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 7.8e-38 161.0 169 46.2
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.7e-37 159.8 168 48.8
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 5.2e-34 148.3 96 72.9
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 3.4e-33 145.6 91 80.2
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 3.7e-32 142.1 83 80.7
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.9e-31 139.8 121 49.6
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 4.1e-31 138.7 92 72.8
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 7.0e-31 137.9 82 79.3
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 4.6e-30 135.2 165 44.8
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.0e-29 134.0 82 76.8
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 3.0e-29 132.5 84 73.8
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 1.3e-24 117.1 98 61.2
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 2.4e-23 112.8 156 41.0
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-22 110.5 66 75.8
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 7.3e-20 101.3 69 66.7
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 6.2e-19 98.2 82 58.5
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.8e-18 96.7 119 38.7
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 6.8e-18 94.7 57 70.2
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 1.3e-13 80.5 46 78.3
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.3e-13 80.5 51 72.5
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 3.0e-13 79.3 46 76.1
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 3.9e-13 79.0 47 70.2
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 4.3e-12 75.5 46 71.7
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-11 73.9 48 70.8
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 1.1e-10 70.9 76 51.3
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 3.4e-09 65.9 49 65.3
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 4.6e-06 55.5 32 78.1


User provided reference genes

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