Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 1.4e-216 756.1 432 100.0
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 4.3e-120 435.6 416 58.9
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 2.0e-109 400.2 434 53.9
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 1.7e-108 397.1 363 61.7
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 5.5e-107 392.1 392 56.4
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 5.7e-104 382.1 456 50.2
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 9.6e-104 381.3 424 54.7
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 1.3e-103 380.9 362 58.0
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 2.8e-103 379.8 390 56.2
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 1.4e-102 377.5 365 58.9
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 2.6e-101 373.2 380 55.5
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 3.4e-101 372.9 366 58.5
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 1.3e-100 370.9 368 57.6
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.7e-100 370.5 426 54.0
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 2.9e-100 369.8 372 57.0
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 8.4e-100 368.2 439 50.8
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 8.4e-100 368.2 365 58.1
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 1.9e-99 367.1 367 56.9
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 4.6e-98 362.5 375 56.3
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 6.1e-98 362.1 420 52.1
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 6.7e-97 358.6 371 55.5
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 1.5e-96 357.5 368 54.3
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 4.3e-96 355.9 458 49.6
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 9.7e-96 354.8 337 58.5
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 2.8e-95 353.2 430 50.9
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 1.1e-94 351.3 367 55.0
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 1.4e-94 350.9 360 55.0
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.8e-94 350.5 426 50.0
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 2.4e-94 350.1 371 55.5
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 5.3e-94 349.0 367 55.0
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 1.5e-93 347.4 381 54.1
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 8.5e-92 341.7 439 53.3
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 1.1e-91 341.3 440 49.5
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 4.2e-91 339.3 380 53.7
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 1.2e-90 337.8 414 47.1
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 1.6e-90 337.4 421 48.5
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 3.6e-90 336.3 424 49.8
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 1.8e-89 334.0 440 47.7
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 1.8e-89 334.0 355 54.4
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 2.3e-89 333.6 355 53.8
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 5.1e-89 332.4 355 53.5
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 6.7e-89 332.0 358 55.9
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 1.5e-88 330.9 363 52.6
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.5e-88 330.9 363 52.3
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 3.3e-88 329.7 435 47.8
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 4.3e-88 329.3 355 53.0
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.8e-87 326.6 353 51.8
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.1e-86 324.7 364 53.0
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 1.4e-86 324.3 370 53.8
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 2.6e-85 320.1 494 43.9
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 1.4e-83 314.3 452 46.0
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 9.4e-83 311.6 365 51.2
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.6e-82 310.8 359 50.7
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 1.6e-82 310.8 417 48.0
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 7.9e-82 308.5 350 51.1
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 7.9e-82 308.5 427 47.5
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 2.3e-81 307.0 414 44.9
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 2.3e-81 307.0 439 44.4
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 2.3e-81 307.0 338 53.3
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 2.3e-81 307.0 380 49.7
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 8.8e-81 305.1 251 63.7
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 2.0e-80 303.9 361 52.9
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 4.4e-80 302.8 228 65.8
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 4.4e-80 302.8 350 50.9
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 3.7e-79 299.7 419 46.3
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 6.3e-79 298.9 434 44.5
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 8.2e-79 298.5 306 53.3
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 1.8e-78 297.4 443 46.0
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 1.8e-78 297.4 359 51.5
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 3.5e-77 293.1 374 49.7
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 3.5e-77 293.1 374 49.7
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 5.9e-77 292.4 368 51.4
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 2.9e-76 290.0 363 50.4
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 3.8e-76 289.7 332 53.9
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 2.5e-75 287.0 203 69.0
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 3.2e-75 286.6 262 58.0
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 9.4e-75 285.0 363 50.1
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 1.2e-74 284.6 368 49.2
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 2.1e-74 283.9 229 63.3
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 2.1e-74 283.9 361 49.6
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 8.0e-74 282.0 248 61.7
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 1.0e-73 281.6 372 49.5
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 1.0e-73 281.6 371 49.9
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 1.8e-73 280.8 374 49.7
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 2.2e-71 273.9 333 47.7
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 8.2e-71 271.9 318 53.5
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 1.4e-70 271.2 343 50.1
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 3.5e-69 266.5 281 55.5
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 1.2e-66 258.1 376 43.4
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 6.8e-65 252.3 413 42.4
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 6.8e-65 252.3 359 44.6
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 9.8e-64 248.4 350 43.4
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 2.2e-63 247.3 331 47.1
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 3.7e-63 246.5 261 53.3
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 8.3e-63 245.4 421 39.9
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 1.2e-61 241.5 376 43.4
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 2.0e-56 224.2 369 37.9
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 3.5e-53 213.4 128 78.9
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 3.0e-49 200.3 122 76.2
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 6.8e-49 199.1 270 43.0
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 1.5e-48 198.0 164 63.4
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 1.3e-47 194.9 170 55.9
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 2.4e-46 190.7 167 54.5
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 3.2e-46 190.3 353 36.0
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 5.4e-46 189.5 123 74.0
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 1.7e-44 184.5 245 40.4
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 5.0e-44 183.0 183 54.6
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 4.0e-33 146.7 226 43.8
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 5.8e-32 142.9 210 46.2
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 2.1e-29 134.4 117 60.7
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 2.1e-26 124.4 160 43.1
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 2.6e-24 117.5 315 34.0
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 6.4e-23 112.8 78 71.8
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 8.4e-23 112.5 68 77.9
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 2.8e-18 97.4 167 34.7
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 1.1e-17 95.5 198 33.8
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 4.0e-17 93.6 181 37.6
ECA232G2176 Erigeron canadensis HOM05D006487 ORTHO05D007982 7.8e-13 79.3 262 27.9
BcaC05g27591 Brassica carinata HOM05D006487 ORTHO05D007982 1.1e-09 68.9 120 41.7
BcaC05g27879 Brassica carinata HOM05D024450 ORTHO05D007982 1.4e-06 58.5 84 44.0


User provided reference genes

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