Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G217600 Manihot esculenta HOM05D006841 ORTHO05D008607 1.7e-296 1021.9 510 100.0
Potri.009G075200 Populus trichocarpa HOM05D006841 ORTHO05D008607 6.6e-237 823.9 510 80.8
Sabra09G0057100 Salix brachista HOM05D006841 ORTHO05D008607 1.4e-231 806.2 510 79.4
Prupe.6G052600 Prunus persica HOM05D006841 ORTHO05D008607 2.0e-217 759.2 511 75.7
Dinv28672 Davidia involucrata HOM05D006841 ORTHO05D008607 6.0e-214 747.7 498 75.7
CSS0042618 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 1.0e-213 746.9 511 72.4
Atru.chr3.4145 Acer truncatum HOM05D006841 ORTHO05D008607 3.0e-213 745.3 508 74.6
Ciclev10028251m.g Citrus clementina HOM05D006841 ORTHO05D008607 3.3e-212 741.9 508 75.6
Thecc.09G353800 Theobroma cacao HOM05D006841 ORTHO05D008607 3.7e-211 738.4 512 73.4
TAR636G1839 Trochodendron aralioides HOM05D006841 ORTHO05D008607 3.7e-211 738.4 514 72.8
COL.COLO4_11072 Corchorus olitorius HOM05D006841 ORTHO05D008607 4.8e-211 738.0 515 73.2
MD11G1066200 Malus domestica HOM05D006841 ORTHO05D008607 4.1e-210 734.9 511 73.0
MD03G1062600 Malus domestica HOM05D006841 ORTHO05D008607 2.6e-209 732.3 511 72.6
TAR369G0096 Trochodendron aralioides HOM05D006841 ORTHO05D008607 4.5e-209 731.5 511 73.6
PGR102G0989 Punica granatum HOM05D006841 ORTHO05D008607 5.0e-208 728.0 519 71.5
Duzib170G1072 Durio zibethinus HOM05D006841 ORTHO05D008607 2.1e-206 722.6 470 76.0
CANSAT54G0320 Cannabis sativa HOM05D006841 ORTHO05D008607 2.7e-206 722.2 466 77.5
TWI79G1747 Tripterygium wilfordii HOM05D006841 ORTHO05D008607 7.9e-206 720.7 516 72.9
Duzib168G0722 Durio zibethinus HOM05D006841 ORTHO05D008607 1.0e-205 720.3 515 71.1
Eucgr.B02230 Eucalyptus grandis HOM05D006841 ORTHO05D008607 1.3e-205 719.9 512 72.5
CiPaw.14G056400 Carya illinoinensis HOM05D006841 ORTHO05D008607 3.0e-205 718.8 490 74.1
Gorai.009G112400 Gossypium raimondii HOM05D006841 ORTHO05D008607 3.9e-205 718.4 512 71.7
Actinidia34467 Actinidia chinensis HOM05D006841 ORTHO05D008607 5.1e-205 718.0 512 70.5
Glyma.18G059800 Glycine max HOM05D006841 ORTHO05D008607 5.7e-204 714.5 517 70.2
Gohir.D05G108200 Gossypium hirsutum HOM05D006841 ORTHO05D008607 7.4e-204 714.1 512 71.3
arahy.Tifrunner.gnm1.ann1.1QT3IR Arachis hypogaea HOM05D006841 ORTHO05D008607 1.3e-203 713.4 495 72.7
arahy.Tifrunner.gnm1.ann1.UR06JS Arachis hypogaea HOM05D006841 ORTHO05D008607 1.3e-203 713.4 497 72.8
Glyma.11G167300 Glycine max HOM05D006841 ORTHO05D008607 1.3e-203 713.4 519 70.1
CSS0014141 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 2.8e-203 712.2 511 69.7
Gohir.A05G108000 Gossypium hirsutum HOM05D006841 ORTHO05D008607 2.8e-203 712.2 512 70.9
Phvul.006G071400 Phaseolus vulgaris HOM05D006841 ORTHO05D008607 3.7e-203 711.8 495 71.9
FAN11G0941 Fragaria x ananassa HOM05D006841 ORTHO05D008607 1.5e-201 706.4 491 73.1
Haze_24381 Corylus avellana HOM05D006841 ORTHO05D008607 2.6e-201 705.7 547 69.1
RcHm_v2.0_Chr5g0070721 Rosa chinensis HOM05D006841 ORTHO05D008607 2.6e-201 705.7 511 71.0
ClCG02G019390 Citrullus lanatus HOM05D006841 ORTHO05D008607 3.4e-201 705.3 490 71.6
FvH4_3g39290 Fragaria vesca HOM05D006841 ORTHO05D008607 7.7e-201 704.1 491 72.9
QL01p039597 Quercus lobata HOM05D006841 ORTHO05D008607 1.3e-200 703.4 528 70.5
FAN25G3694 Fragaria x ananassa HOM05D006841 ORTHO05D008607 2.9e-200 702.2 511 70.8
Sed0019546 Sechium edule HOM05D006841 ORTHO05D008607 3.8e-200 701.8 461 73.8
vmacro14612 Vaccinium macrocarpon HOM05D006841 ORTHO05D008607 1.4e-199 699.9 513 68.8
CsaV3_6G016010 Cucumis sativus L. HOM05D006841 ORTHO05D008607 1.9e-199 699.5 461 74.2
FAN21G2904 Fragaria x ananassa HOM05D006841 ORTHO05D008607 1.9e-199 699.5 511 70.6
Rhsim01G0239400 Rhododendron simsii HOM05D006841 ORTHO05D008607 1.0e-197 693.7 514 69.5
MELO3C026835.2 Cucumis melo HOM05D006841 ORTHO05D008607 5.1e-197 691.4 490 71.2
Lj6g0024894 Lotus japonicus HOM05D006841 ORTHO05D008607 6.7e-197 691.0 503 69.2
Lalb_Chr18g0051231 Lupinus albus HOM05D006841 ORTHO05D008607 8.8e-197 690.6 501 69.3
CiPaw.13G073200 Carya illinoinensis HOM05D006841 ORTHO05D008607 2.6e-196 689.1 466 73.4
SalBow2G2391 Salvia bowleyana HOM05D006841 ORTHO05D008607 1.3e-195 686.8 440 77.0
Medtr3g465390 Medicago truncatula HOM05D006841 ORTHO05D008607 1.4e-194 683.3 519 67.4
Solyc05g012140.3 Solanum lycopersicum HOM05D006841 ORTHO05D008607 3.1e-194 682.2 514 68.1
Sopen05g006930 Solanum pennellii HOM05D006841 ORTHO05D008607 4.1e-194 681.8 514 68.1
PGSC0003DMG401028313 Solanum tuberosum HOM05D006841 ORTHO05D008607 2.0e-193 679.5 514 68.3
Oeu018490.1 Olea europaea HOM05D006841 ORTHO05D008607 1.0e-192 677.2 448 74.8
TPR.G32925 Trifolium pratense HOM05D006841 ORTHO05D008607 1.7e-192 676.4 499 68.7
Sc06g0008150 Simmondsia chinensis HOM05D006841 ORTHO05D008607 3.8e-192 675.2 512 67.4
Psat5g157440 Pisum sativum HOM05D006841 ORTHO05D008607 5.0e-192 674.9 501 67.9
Lj2A1088G41 Lonicera japonica HOM05D006841 ORTHO05D008607 1.1e-191 673.7 441 76.2
MSTRG.12683 Avicennia marina HOM05D006841 ORTHO05D008607 1.0e-189 667.2 447 74.0
VMungo0540G0160 Vigna mungo HOM05D006841 ORTHO05D008607 1.1e-188 663.7 442 73.8
AUR62009700 Chenopodium quinoa HOM05D006841 ORTHO05D008607 1.7e-187 659.8 463 70.8
AUR62036246 Chenopodium quinoa HOM05D006841 ORTHO05D008607 4.8e-187 658.3 463 71.1
Peaxi162Scf01324g00238 Petunia axillaris HOM05D006841 ORTHO05D008607 4.8e-187 658.3 450 73.3
EL10Ac7g15887 Beta vulgaris HOM05D006841 ORTHO05D008607 2.4e-186 656.0 452 71.2
Ah.15g096690 Amaranthus hybridus HOM05D006841 ORTHO05D008607 5.3e-186 654.8 461 69.6
CAN.G707.10 Capsicum annuum HOM05D006841 ORTHO05D008607 1.6e-185 653.3 447 72.3
HanXRQChr01g0011601 Helianthus annuus HOM05D006841 ORTHO05D008607 3.5e-185 652.1 443 71.6
Migut.N00773 Erythranthe guttata HOM05D006841 ORTHO05D008607 5.0e-184 648.3 458 69.4
Lsat_1_v5_gn_5_173260 Lactuca sativa HOM05D006841 ORTHO05D008607 1.1e-183 647.1 487 67.6
Hund05042 Selenicereus undatus HOM05D006841 ORTHO05D008607 1.2e-182 643.7 451 69.8
Aqoxy1G01268 Aquilegia oxysepala HOM05D006841 ORTHO05D008607 2.6e-180 636.0 443 71.6
PSO017G2874 Papaver somniferum HOM05D006841 ORTHO05D008607 7.5e-180 634.4 469 68.0
PSO349G0316 Papaver somniferum HOM05D006841 ORTHO05D008607 2.0e-177 626.3 470 67.4
Ah.08g215320 Amaranthus hybridus HOM05D006841 ORTHO05D008607 1.1e-175 620.5 440 69.5
THA.LOC104800754 Tarenaya hassleriana HOM05D006841 ORTHO05D008607 1.2e-174 617.1 452 66.8
unitig_94.g28363 Utricularia gibba HOM05D006841 ORTHO05D008607 1.0e-173 614.0 440 68.9
ECA248G2088 Erigeron canadensis HOM05D006841 ORTHO05D008607 1.4e-173 613.6 411 72.5
Ca_14982_v3 Cicer arietinum L. HOM05D006841 ORTHO05D008607 3.0e-173 612.5 493 63.5
Thhalv10016546m.g Eutrema salsugineum HOM05D006841 ORTHO05D008607 2.2e-171 606.3 518 62.0
MBI15_g21765_MAGBIO Magnolia biondii HOM05D006841 ORTHO05D008607 8.3e-171 604.4 442 68.3
Sp4g12660 Schrenkiella parvula HOM05D006841 ORTHO05D008607 1.1e-170 604.0 515 61.7
SGA_v2.0_scaffold104G30129 Striga asiatica HOM05D006841 ORTHO05D008607 1.4e-170 603.6 450 66.7
Aa31LG5G6580 Aethionema arabicum HOM05D006841 ORTHO05D008607 4.1e-170 602.1 522 60.3
AT2G30100 Arabidopsis thaliana HOM05D006841 ORTHO05D008607 1.0e-168 597.4 522 60.2
CDE06G2104 Ceratophyllum demersum HOM05D006841 ORTHO05D008607 1.1e-167 594.0 447 64.0
AL4G24870 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 1.5e-167 593.6 477 62.7
BolC4t27410H Brassica oleracea HOM05D006841 ORTHO05D008607 1.9e-167 593.2 455 64.0
CARHR123400 Cardamine hirsuta HOM05D006841 ORTHO05D008607 2.5e-167 592.8 455 64.0
BraA04t17817Z Brassica rapa HOM05D006841 ORTHO05D008607 4.2e-167 592.0 465 62.8
A04p22780 Brassica napus HOM05D006841 ORTHO05D008607 9.5e-167 590.9 463 62.9
Carub.0004s1120 Capsella rubella HOM05D006841 ORTHO05D008607 8.0e-166 587.8 521 57.8
C04p58980 Brassica napus HOM05D006841 ORTHO05D008607 1.8e-165 586.6 455 63.1
GSVIVG01024686001 Vitis vinifera HOM05D006841 ORTHO05D008607 6.8e-165 584.7 380 77.9
BcaC02g08056 Brassica carinata HOM05D006841 ORTHO05D008607 3.5e-161 572.4 445 63.1
Cc01_g14600 Coffea canephora HOM05D006841 ORTHO05D008607 1.6e-158 563.5 397 71.5
DCAR_007349 Daucus carota HOM05D006841 ORTHO05D008607 5.6e-151 538.5 353 74.8
Zm00001eb286480 Zea mays HOM05D006841 ORTHO05D008607 1.2e-145 520.8 420 60.0
Os05g0353300 Oryza sativa ssp. japonica HOM05D006841 ORTHO05D008607 1.1e-143 514.2 429 58.7
ATR0174G035 Amborella trichopoda HOM05D006841 ORTHO05D008607 2.5e-143 513.1 426 61.5
Actinidia23875 Actinidia chinensis HOM05D006841 ORTHO05D008607 1.3e-128 464.2 304 75.7
AL59U10050 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 7.3e-127 458.4 416 58.4
HPP92_025104 Vanilla planifolia HOM05D006841 ORTHO05D008607 5.4e-114 415.6 342 59.9
SEGI_38470 Sequoiadendron giganteum HOM05D006841 ORTHO05D008607 5.6e-111 405.6 423 47.8
Hma1.2p1_0146F.1_g065520 Hydrangea macrophylla HOM05D006841 ORTHO05D008607 5.8e-108 395.6 257 74.7
Nn2g10947 Nelumbo nucifera HOM05D006841 ORTHO05D008607 1.2e-92 344.7 261 67.0
CSS0012316 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 3.4e-92 343.2 422 48.3
Mapoly0068s0098 Marchantia polymorpha HOM05D006841 ORTHO05D008607 1.7e-91 340.9 448 42.4
Nn2g13216 Nelumbo nucifera HOM05D006841 ORTHO05D008607 1.1e-82 311.6 215 72.1
Cpa.g.sc2.394 Carica papaya HOM05D006841 ORTHO05D008607 2.8e-70 270.4 150 85.3
Pp3c12_8330 Physcomitrium patens HOM05D006841 ORTHO05D008607 4.5e-68 263.1 425 36.7
MD11G1194000 Malus domestica HOM05D006841 ORTHO05D008607 1.3e-62 245.0 155 78.7
SMO304G0125 Selaginella moellendorffii HOM05D006841 ORTHO05D008607 3.7e-62 243.4 417 35.0
Oeu034210.1 Olea europaea HOM05D009051 ORTHO05D000140 2.0e-47 194.5 171 58.5
Oeu034517.1 Olea europaea HOM05D006841 ORTHO05D008607 1.3e-35 155.2 228 43.0
Oeu034514.1 Olea europaea HOM05D006841 ORTHO05D008607 1.5e-34 151.8 126 61.1
Oeu034513.1 Olea europaea HOM05D006841 ORTHO05D008607 7.3e-34 149.4 228 41.7
Oeu034518.1 Olea europaea HOM05D006841 ORTHO05D008607 1.2e-33 148.7 148 54.1
AagrBONN_evm.TU.Sc2ySwM_117.787 Anthoceros agrestis HOM05D006841 ORTHO05D008607 1.6e-33 148.3 192 43.2
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 4.9e-30 136.7 107 61.7
Oeu019495.1 Olea europaea HOM05D006841 ORTHO05D008607 3.1e-16 90.9 143 37.8


User provided reference genes

Program Settings