Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 2.2e-158 562.4 311 100.0
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 4.0e-59 232.6 287 50.5
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.9e-57 226.5 278 50.7
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 8.3e-57 224.9 276 50.0
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.2e-55 221.1 291 48.5
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 1.6e-55 220.7 295 49.5
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 7.8e-55 218.4 268 48.9
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.0e-54 218.0 285 49.5
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 3.0e-54 216.5 296 46.6
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 5.0e-54 215.7 276 49.3
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 5.0e-54 215.7 287 48.1
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 6.6e-54 215.3 298 45.0
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 8.6e-54 214.9 298 45.0
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 1.5e-53 214.2 270 48.1
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.9e-53 213.8 306 48.4
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 4.3e-53 212.6 300 48.3
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 5.6e-53 212.2 299 44.5
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 9.5e-53 211.5 256 49.6
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 1.6e-52 210.7 246 52.8
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 3.6e-52 209.5 280 45.7
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 6.2e-52 208.8 268 48.5
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 8.1e-52 208.4 262 48.1
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 2.3e-51 206.8 250 50.4
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 2.3e-51 206.8 278 46.0
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 3.1e-51 206.5 272 46.0
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 6.8e-51 205.3 273 45.8
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 8.9e-51 204.9 278 45.7
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 1.2e-50 204.5 265 48.3
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 2.6e-50 203.4 261 45.6
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 4.4e-50 202.6 275 44.7
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 5.8e-50 202.2 275 44.7
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 7.5e-50 201.8 260 46.9
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 9.8e-50 201.4 292 43.5
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 9.8e-50 201.4 273 47.3
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 9.8e-50 201.4 265 47.5
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 1.3e-49 201.1 270 47.8
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 1.3e-49 201.1 289 45.7
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 1.3e-49 201.1 298 44.0
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 1.7e-49 200.7 273 45.1
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.7e-49 200.7 241 49.0
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 2.2e-49 200.3 249 48.2
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 2.9e-49 199.9 270 47.8
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 2.9e-49 199.9 274 44.9
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 2.9e-49 199.9 249 49.8
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 3.7e-49 199.5 291 44.7
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 3.7e-49 199.5 302 46.7
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 3.7e-49 199.5 264 47.3
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 3.7e-49 199.5 268 45.5
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 6.4e-49 198.7 264 46.6
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 6.4e-49 198.7 259 47.9
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 8.3e-49 198.4 252 48.0
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 1.1e-48 198.0 284 44.7
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 1.4e-48 197.6 281 43.8
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 1.9e-48 197.2 261 44.8
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 1.9e-48 197.2 277 44.4
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 2.4e-48 196.8 310 42.6
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 2.4e-48 196.8 279 45.5
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 4.1e-48 196.1 261 46.7
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 4.1e-48 196.1 310 42.6
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 9.2e-48 194.9 234 51.3
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 9.2e-48 194.9 276 44.9
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 1.2e-47 194.5 258 46.9
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 1.2e-47 194.5 261 47.1
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 1.2e-47 194.5 290 42.8
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.6e-47 194.1 277 45.5
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 1.6e-47 194.1 249 49.0
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 2.1e-47 193.7 274 44.5
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 2.1e-47 193.7 261 48.3
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 2.7e-47 193.4 273 47.3
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 2.7e-47 193.4 275 46.9
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 1.0e-46 191.4 242 50.4
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.3e-46 190.3 277 44.4
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 2.3e-46 190.3 248 46.0
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 5.1e-46 189.1 262 45.8
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 5.1e-46 189.1 252 49.2
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 8.6e-46 188.3 261 46.0
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 1.1e-45 188.0 249 48.6
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 1.5e-45 187.6 238 50.8
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 1.9e-45 187.2 255 47.5
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 1.2e-44 184.5 270 44.1
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 2.1e-44 183.7 290 43.4
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 8.1e-44 181.8 255 43.9
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 9.9e-42 174.9 307 41.4
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.4e-40 171.0 276 39.5
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 5.4e-40 169.1 277 40.1
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 6.0e-39 165.6 230 44.8
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 7.8e-39 165.2 279 39.4
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 7.8e-39 165.2 233 43.8
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.0e-38 164.9 222 44.1
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 3.0e-38 163.3 274 38.3
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 3.4e-34 149.8 255 40.4
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 5.8e-34 149.1 256 39.8
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 1.6e-31 141.0 275 36.4
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 7.8e-31 138.7 251 40.2
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 6.6e-30 135.6 254 39.0
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 8.7e-30 135.2 201 42.8
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 3.3e-29 133.3 279 36.6
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 3.3e-29 133.3 126 59.5
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 9.6e-29 131.7 277 35.4
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 9.6e-29 131.7 225 40.9
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 1.3e-28 131.3 250 39.6
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 1.6e-28 131.0 278 36.0
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 2.1e-28 130.6 280 36.4
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 6.2e-28 129.0 273 36.3
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 6.2e-28 129.0 231 35.5
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 1.4e-27 127.9 273 36.3
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 1.4e-27 127.9 273 36.3
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.8e-27 127.5 279 36.2
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 2.4e-27 127.1 285 34.4
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 2.4e-27 127.1 265 36.6
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 2.4e-27 127.1 265 36.6
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 2.4e-27 127.1 265 36.6
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 4.0e-27 126.3 170 42.9
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 4.0e-27 126.3 249 37.8
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 3.4e-26 123.2 254 35.4
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 3.4e-26 123.2 235 35.3
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 3.4e-26 123.2 262 33.2
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 5.8e-26 122.5 242 37.2
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 7.6e-26 122.1 228 37.3
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 7.6e-26 122.1 188 43.1
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.7e-25 120.9 254 33.1
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 6.4e-25 119.0 271 34.3
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 8.4e-25 118.6 269 34.2
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 7.1e-24 115.5 254 33.9
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 2.1e-23 114.0 254 33.9
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 2.1e-23 114.0 254 33.9
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 2.7e-23 113.6 261 34.1
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 6.0e-23 112.5 254 33.5
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 1.7e-22 110.9 261 33.7
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.8e-20 103.6 250 34.0
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 3.4e-18 96.7 258 30.2
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 3.4e-18 96.7 258 30.2
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 2.7e-15 87.0 126 43.7
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 6.7e-14 82.4 187 32.6
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 9.6e-13 78.6 177 32.8
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 8.1e-12 75.5 246 27.2
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 8.1e-12 75.5 173 32.4
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 8.1e-12 75.5 173 32.4
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 8.1e-12 75.5 173 32.4
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 4.9e-09 66.2 175 30.3
PGSC0003DMG400021951 Solanum tuberosum HOM05D004919 ORTHO05D005994 5.5e-08 62.8 209 28.2
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 6.0e-07 59.3 136 32.4
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 6.0e-07 59.3 136 32.4
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 1.8e-06 57.8 146 32.2
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 2.3e-06 57.4 145 32.4
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 3.9e-06 56.6 145 32.4
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 5.1e-06 56.2 154 29.2


User provided reference genes

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