Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G212400 Manihot esculenta HOM05D005261 ORTHO05D006180 4.8e-227 790.8 391 100.0
Ciclev10001407m.g Citrus clementina HOM05D005261 ORTHO05D006180 2.0e-164 582.8 393 74.6
Atru.chr13.1289 Acer truncatum HOM05D005261 ORTHO05D006180 2.7e-161 572.4 396 73.0
Sabra02G0072100 Salix brachista HOM05D005261 ORTHO05D006180 2.3e-160 569.3 394 74.4
GSVIVG01008967001 Vitis vinifera HOM05D005261 ORTHO05D006180 4.0e-157 558.5 394 71.1
QL12p035629 Quercus lobata HOM05D005261 ORTHO05D006180 2.0e-156 556.2 389 73.0
Cfa015937 Carpinus fangiana HOM05D005261 ORTHO05D006180 9.8e-156 553.9 393 72.0
FAN04G2261 Fragaria x ananassa HOM05D005261 ORTHO05D006180 4.6e-153 545.0 397 71.0
MD08G1174900 Malus domestica HOM05D005261 ORTHO05D006180 7.8e-153 544.3 394 70.3
FAN13G1502 Fragaria x ananassa HOM05D005261 ORTHO05D006180 1.7e-152 543.1 394 71.1
TWI36G1273 Tripterygium wilfordii HOM05D005261 ORTHO05D006180 2.3e-152 542.7 384 73.4
Thecc.08G114100 Theobroma cacao HOM05D005261 ORTHO05D006180 5.0e-152 541.6 394 70.8
FAN08G3477 Fragaria x ananassa HOM05D005261 ORTHO05D006180 6.6e-152 541.2 393 70.5
Dinv13059 Davidia involucrata HOM05D005261 ORTHO05D006180 2.5e-151 539.3 390 72.1
FvH4_5g38270 Fragaria vesca HOM05D005261 ORTHO05D006180 3.3e-151 538.9 396 70.5
FAN18G3314 Fragaria x ananassa HOM05D005261 ORTHO05D006180 5.6e-151 538.1 393 70.0
CiPaw.06G023200 Carya illinoinensis HOM05D005261 ORTHO05D006180 9.5e-151 537.3 363 74.7
Prupe.1G509000 Prunus persica HOM05D005261 ORTHO05D006180 2.1e-150 536.2 357 75.1
Cpa.g.sc77.98 Carica papaya HOM05D005261 ORTHO05D006180 2.8e-150 535.8 356 76.7
RcHm_v2.0_Chr7g0240261 Rosa chinensis HOM05D005261 ORTHO05D006180 3.6e-150 535.4 361 74.2
Haze_00548 Corylus avellana HOM05D005261 ORTHO05D006180 1.8e-149 533.1 424 66.3
Duzib093G0733 Durio zibethinus HOM05D005261 ORTHO05D006180 2.3e-149 532.7 369 74.0
CANSAT54G1848 Cannabis sativa HOM05D005261 ORTHO05D006180 1.2e-148 530.4 400 69.5
Gohir.D06G040600 Gossypium hirsutum HOM05D005261 ORTHO05D006180 1.3e-147 526.9 394 69.8
Actinidia31491 Actinidia chinensis HOM05D005261 ORTHO05D006180 1.7e-147 526.6 395 68.4
Gorai.010G045400 Gossypium raimondii HOM05D005261 ORTHO05D006180 1.7e-147 526.6 394 69.8
Dinv44727 Davidia involucrata HOM05D005261 ORTHO05D006180 2.2e-147 526.2 356 75.8
ClCG11G007980 Citrullus lanatus HOM05D005261 ORTHO05D006180 7.3e-143 511.1 422 63.7
Eucgr.H00927 Eucalyptus grandis HOM05D005261 ORTHO05D006180 7.3e-143 511.1 389 67.1
vmacro04773 Vaccinium macrocarpon HOM05D005261 ORTHO05D006180 1.6e-142 510.0 368 69.0
MELO3C008135.2 Cucumis melo HOM05D005261 ORTHO05D006180 4.7e-142 508.4 383 68.9
Rhsim07G0199400 Rhododendron simsii HOM05D005261 ORTHO05D006180 4.7e-142 508.4 372 69.1
Sed0017821 Sechium edule HOM05D005261 ORTHO05D006180 4.7e-142 508.4 363 70.5
RhsimUnG0073100 Rhododendron simsii HOM05D005261 ORTHO05D006180 8.1e-142 507.7 372 68.8
Potri.002G091300 Populus trichocarpa HOM05D005261 ORTHO05D006180 1.8e-141 506.5 420 65.2
Hma1.2p1_0276F.1_g111380 Hydrangea macrophylla HOM05D005261 ORTHO05D006180 3.1e-141 505.8 364 71.2
CsaV3_2G033630 Cucumis sativus L. HOM05D005261 ORTHO05D006180 6.8e-141 504.6 387 67.4
Duzib041G0715 Durio zibethinus HOM05D005261 ORTHO05D006180 1.5e-140 503.4 383 68.7
THA.LOC104813129 Tarenaya hassleriana HOM05D005261 ORTHO05D006180 3.7e-139 498.8 375 67.5
Glyma.06G107100 Glycine max HOM05D005261 ORTHO05D006180 6.4e-139 498.0 394 66.8
Phvul.009G027100 Phaseolus vulgaris HOM05D005261 ORTHO05D006180 6.4e-139 498.0 396 66.4
Cc10_g05970 Coffea canephora HOM05D005261 ORTHO05D006180 1.1e-138 497.3 354 72.0
Glyma.04G107300 Glycine max HOM05D005261 ORTHO05D006180 1.4e-138 496.9 394 66.5
VMungo1309G2277 Vigna mungo HOM05D005261 ORTHO05D006180 1.9e-138 496.5 396 66.4
EL10Ac1g01697 Beta vulgaris HOM05D005261 ORTHO05D006180 2.4e-138 496.1 354 68.4
TWI56G1213 Tripterygium wilfordii HOM05D005261 ORTHO05D006180 9.2e-138 494.2 339 74.9
CAN.G617.12 Capsicum annuum HOM05D005261 ORTHO05D006180 2.7e-137 492.7 365 69.0
PGR042G1365 Punica granatum HOM05D005261 ORTHO05D006180 1.0e-136 490.7 359 70.5
Nitab4.5_0002561g0060 Nicotiana tabacum HOM05D005261 ORTHO05D006180 5.1e-136 488.4 325 74.5
DCAR_023858 Daucus carota HOM05D005261 ORTHO05D006180 2.5e-135 486.1 358 69.8
HanXRQChr02g0043751 Helianthus annuus HOM05D005261 ORTHO05D006180 2.5e-135 486.1 321 74.1
Nitab4.5_0001915g0120 Nicotiana tabacum HOM05D005261 ORTHO05D006180 2.5e-135 486.1 354 70.1
Aqoxy6G00521 Aquilegia oxysepala HOM05D005261 ORTHO05D006180 9.6e-135 484.2 391 63.9
Nitab4.5_0003428g0020 Nicotiana tabacum HOM05D005261 ORTHO05D006180 4.7e-134 481.9 356 68.8
TAR625G1239 Trochodendron aralioides HOM05D005261 ORTHO05D006180 6.2e-134 481.5 372 68.8
MSTRG.24247 Avicennia marina HOM05D005261 ORTHO05D006180 1.1e-133 480.7 360 68.9
Ca_26314_v3 Cicer arietinum L. HOM05D005261 ORTHO05D006180 4.0e-133 478.8 323 74.6
Solyc04g072390.3 Solanum lycopersicum HOM05D005261 ORTHO05D006180 6.8e-133 478.0 366 68.0
Lj1g0011675 Lotus japonicus HOM05D005261 ORTHO05D006180 8.9e-133 477.6 366 69.7
MBI02_g34268_MAGBIO Magnolia biondii HOM05D005261 ORTHO05D006180 8.9e-133 477.6 382 66.2
Gohir.A06G039700 Gossypium hirsutum HOM05D005261 ORTHO05D006180 1.2e-132 477.2 394 65.2
TPR.G16249 Trifolium pratense HOM05D005261 ORTHO05D006180 1.5e-132 476.9 322 74.8
Ah.03g139490 Amaranthus hybridus HOM05D005261 ORTHO05D006180 3.4e-132 475.7 363 66.7
arahy.Tifrunner.gnm1.ann1.S5D643 Arachis hypogaea HOM05D005261 ORTHO05D006180 3.4e-132 475.7 343 70.6
Aa31LG6G9000 Aethionema arabicum HOM05D005261 ORTHO05D006180 5.8e-132 474.9 386 66.6
CARHR034970 Cardamine hirsuta HOM05D005261 ORTHO05D006180 5.8e-132 474.9 355 69.0
Nn5g28978 Nelumbo nucifera HOM05D005261 ORTHO05D006180 5.8e-132 474.9 369 69.4
Sc14g0001090 Simmondsia chinensis HOM05D005261 ORTHO05D006180 7.6e-132 474.6 319 73.0
Sopen04g028560 Solanum pennellii HOM05D005261 ORTHO05D006180 7.6e-132 474.6 353 69.4
AT1G36310 Arabidopsis thaliana HOM05D005261 ORTHO05D006180 4.9e-131 471.9 382 64.9
Thhalv10004311m.g Eutrema salsugineum HOM05D005261 ORTHO05D006180 4.9e-131 471.9 375 65.9
arahy.Tifrunner.gnm1.ann1.232HHD Arachis hypogaea HOM05D005261 ORTHO05D006180 1.1e-130 470.7 343 70.3
Sp1g30710 Schrenkiella parvula HOM05D005261 ORTHO05D006180 3.2e-130 469.2 382 64.4
Medtr2g460880 Medicago truncatula HOM05D005261 ORTHO05D006180 9.3e-130 467.6 323 74.3
Carub.0001s3363 Capsella rubella HOM05D005261 ORTHO05D006180 2.1e-129 466.5 379 64.4
PSO675G0151 Papaver somniferum HOM05D005261 ORTHO05D006180 4.6e-129 465.3 321 70.4
PSO447G0033 Papaver somniferum HOM05D005261 ORTHO05D006180 6.0e-129 464.9 321 71.0
PSO541G3947 Papaver somniferum HOM05D005261 ORTHO05D006180 1.7e-128 463.4 321 70.7
Lsat_1_v5_gn_1_3980 Lactuca sativa HOM05D005261 ORTHO05D006180 2.3e-128 463.0 349 67.0
A08p07950 Brassica napus HOM05D005261 ORTHO05D006180 3.9e-128 462.2 359 65.7
Psat5g135960 Pisum sativum HOM05D005261 ORTHO05D006180 6.6e-128 461.5 321 73.8
BcaC02g11530 Brassica carinata HOM05D005261 ORTHO05D006180 8.7e-128 461.1 358 66.2
BraA05t20051Z Brassica rapa HOM05D005261 ORTHO05D006180 1.1e-127 460.7 321 71.3
BraA08t32817Z Brassica rapa HOM05D005261 ORTHO05D006180 1.1e-127 460.7 359 65.7
AL1G50930 Arabidopsis lyrata HOM05D005261 ORTHO05D006180 3.3e-127 459.1 374 63.9
BcaC07g37496 Brassica carinata HOM05D005261 ORTHO05D006180 7.3e-127 458.0 372 64.2
C04p14350 Brassica napus HOM05D005261 ORTHO05D006180 7.3e-127 458.0 354 66.7
BolC8t47816H Brassica oleracea HOM05D005261 ORTHO05D006180 7.3e-127 458.0 372 64.2
BcaB03g13642 Brassica carinata HOM05D005261 ORTHO05D006180 2.1e-126 456.4 372 63.4
A05p11060 Brassica napus HOM05D005261 ORTHO05D006180 6.2e-126 454.9 317 71.6
Os02g0750500 Oryza sativa ssp. japonica HOM05D005261 ORTHO05D006180 6.2e-126 454.9 331 69.2
SGA_v2.0_scaffold12G05968 Striga asiatica HOM05D005261 ORTHO05D006180 5.3e-125 451.8 317 69.1
Migut.N03156 Erythranthe guttata HOM05D005261 ORTHO05D006180 1.2e-124 450.7 353 65.2
CDE02G3063 Ceratophyllum demersum HOM05D005261 ORTHO05D006180 2.2e-123 446.4 325 70.5
BolC4t23021H Brassica oleracea HOM05D005261 ORTHO05D006180 8.4e-123 444.5 347 66.9
Zm00001eb255040 Zea mays HOM05D005261 ORTHO05D006180 1.1e-122 444.1 330 67.6
unitig_22.g6794 Utricularia gibba HOM05D005261 ORTHO05D006180 3.5e-121 439.1 326 66.9
AUR62036786 Chenopodium quinoa HOM05D005261 ORTHO05D006180 6.0e-121 438.3 365 62.7
SEGI_02326 Sequoiadendron giganteum HOM05D005261 ORTHO05D006180 2.3e-120 436.4 326 65.6
AUR62033704 Chenopodium quinoa HOM05D005261 ORTHO05D006180 3.9e-120 435.6 365 62.2
SHI24797 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-119 433.7 361 63.7
AUR62034370 Chenopodium quinoa HOM05D005261 ORTHO05D006180 3.3e-119 432.6 292 71.9
AUR62022337 Chenopodium quinoa HOM05D005261 ORTHO05D006180 3.6e-118 429.1 320 66.6
Peaxi162Scf00756g00436 Petunia axillaris HOM05D005261 ORTHO05D006180 1.8e-117 426.8 289 74.7
HPP92_001925 Vanilla planifolia HOM05D005261 ORTHO05D006180 4.9e-115 418.7 318 63.8
ATR0564G365 Amborella trichopoda HOM05D005261 ORTHO05D006180 4.6e-113 412.1 303 68.6
Oeu020872.1 Olea europaea HOM05D005261 ORTHO05D006180 6.7e-112 408.3 325 65.8
AagrBONN_evm.TU.Sc2ySwM_228.1177 Anthoceros agrestis HOM05D005261 ORTHO05D006180 2.0e-108 396.7 316 62.7
Mapoly0189s0001 Marchantia polymorpha HOM05D005261 ORTHO05D006180 2.2e-107 393.3 318 61.0
SHI53236 Sapria himalayana HOM05D005261 ORTHO05D006180 1.2e-105 387.5 342 59.9
Pp3c8_16200 Physcomitrium patens HOM05D005261 ORTHO05D006180 6.0e-105 385.2 316 60.8
SalBow8G1448 Salvia bowleyana HOM05D005261 ORTHO05D006180 8.7e-104 381.3 371 55.3
SMO361G0461 Selaginella moellendorffii HOM05D005261 ORTHO05D006180 1.2e-100 370.9 313 59.1
Hma1.2p1_0276F.1_g111370 Hydrangea macrophylla HOM05D005261 ORTHO05D006180 3.5e-97 359.4 279 69.2
SHI35611 Sapria himalayana HOM05D005261 ORTHO05D006180 3.3e-95 352.8 316 59.8
Lj3C845T19 Lonicera japonica HOM05D005261 ORTHO05D006180 8.2e-94 348.2 192 87.0
Lalb_Chr17g0344051 Lupinus albus HOM05D005261 ORTHO05D006180 1.4e-93 347.4 233 73.8
ECA247G1584 Erigeron canadensis HOM05D000230 ORTHO05D006180 2.6e-92 343.2 250 72.0
CBR_g15981 Chara braunii HOM05D005261 ORTHO05D006180 3.9e-80 302.8 341 47.8
COL.COLO4_16503 Corchorus olitorius HOM05D005261 ORTHO05D006180 9.7e-71 271.6 193 74.1
SHI34852 Sapria himalayana HOM05D005261 ORTHO05D006180 2.2e-67 260.4 334 48.5
SHI34844 Sapria himalayana HOM05D005261 ORTHO05D006180 9.4e-66 255.0 330 48.5
SHI20620 Sapria himalayana HOM05D005261 ORTHO05D006180 1.0e-64 251.5 281 52.7
SHI43763 Sapria himalayana HOM05D005261 ORTHO05D006180 9.2e-53 211.8 170 62.9
SHI46120 Sapria himalayana HOM05D005261 ORTHO05D006180 1.6e-52 211.1 184 60.3
SHI53472 Sapria himalayana HOM05D005261 ORTHO05D006180 2.8e-49 200.3 172 59.9
PRCOL_00005291 Prasinoderma coloniale HOM05D005261 ORTHO05D006180 1.0e-48 198.4 365 36.7
SHI32317 Sapria himalayana HOM05D005261 ORTHO05D006180 4.0e-48 196.4 328 39.3
Rhsim10G0118000 Rhododendron simsii HOM05D005261 ORTHO05D006180 2.9e-46 190.3 183 59.0
SHI52923 Sapria himalayana HOM05D005261 ORTHO05D006180 1.1e-45 188.3 167 59.3
Oeu017307.1 Olea europaea HOM05D005261 ORTHO05D006180 7.3e-42 175.6 132 68.2
SHI54958 Sapria himalayana HOM05D005261 ORTHO05D006180 1.5e-39 167.9 117 69.2
Cre04.g224002 Chlamydomonas reinhardtii HOM05D005261 ORTHO05D006180 4.4e-39 166.4 167 49.7
SHI49977 Sapria himalayana HOM05D005261 ORTHO05D006180 1.9e-37 161.0 170 53.5
SHI53189 Sapria himalayana HOM05D005261 ORTHO05D006180 4.6e-36 156.4 172 54.1
MCO14G461 Micromonas commoda HOM05D005261 ORTHO05D006180 1.4e-32 144.8 327 33.6
SHI49044 Sapria himalayana HOM05D005261 ORTHO05D006180 1.9e-29 134.4 127 55.9
Rhsim13G0124000 Rhododendron simsii HOM05D005261 ORTHO05D006180 2.1e-25 120.9 187 44.4
SHI51067 Sapria himalayana HOM05D005261 ORTHO05D006180 4.0e-24 116.7 139 46.8
Lj3A845G93 Lonicera japonica HOM05D005261 ORTHO05D006180 4.4e-23 113.2 57 91.2
SHI52089 Sapria himalayana HOM05D005261 ORTHO05D006180 7.6e-23 112.5 140 45.7
PGSC0003DMG401027564 Solanum tuberosum HOM05D001663 ORTHO05D003186 2.9e-22 110.5 72 73.6
SHI51747 Sapria himalayana HOM05D005261 ORTHO05D006180 1.1e-21 108.6 140 44.3
SHI41608 Sapria himalayana HOM05D005261 ORTHO05D006180 4.6e-20 103.2 145 44.8
SHI50342 Sapria himalayana HOM05D005261 ORTHO05D006180 3.3e-10 70.5 65 63.1
ClCG11G007990 Citrullus lanatus HOM05D005261 ORTHO05D006180 4.9e-06 56.6 32 75.0
Migut.E00183 Erythranthe guttata HOM05D005748 ORTHO05D007123 8.4e-06 55.8 141 29.8


User provided reference genes

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