Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G212300 Manihot esculenta HOM05D010097 ORTHO05D011665 6.8e-108 394.0 203 100.0
Manes.18G136421 Manihot esculenta HOM05D010097 ORTHO05D011665 1.4e-52 210.3 191 61.8
Manes.18G137881 Manihot esculenta HOM05D010097 ORTHO05D011665 7.9e-32 141.4 155 54.2
QL01p039458 Quercus lobata HOM05D010097 ORTHO05D011665 2.3e-31 139.8 173 50.3
Potri.009G074900 Populus trichocarpa HOM05D010097 ORTHO05D011665 2.5e-30 136.3 162 46.3
CiPaw.13G073400 Carya illinoinensis HOM05D010097 ORTHO05D011665 6.9e-28 128.3 149 53.7
Sabra09G0056800 Salix brachista HOM05D010097 ORTHO05D011665 2.1e-24 116.7 163 41.7
Cfa011739 Carpinus fangiana HOM05D010097 ORTHO05D011665 2.7e-24 116.3 178 44.9
Thecc.09G353500 Theobroma cacao HOM05D010097 ORTHO05D011665 2.7e-24 116.3 179 40.2
Haze_24378 Corylus avellana HOM05D010097 ORTHO05D011665 4.6e-24 115.5 177 44.6
Sed0022779 Sechium edule HOM05D010097 ORTHO05D011665 1.6e-21 107.1 98 54.1
MELO3C026833.2 Cucumis melo HOM05D000734 ORTHO05D011665 4.8e-21 105.5 104 51.0
ClCG02G019420 Citrullus lanatus HOM05D010097 ORTHO05D011665 3.1e-20 102.8 149 41.6
Gohir.A08G202300 Gossypium hirsutum HOM05D010097 ORTHO05D011665 5.3e-20 102.1 183 39.3
Gohir.D08G219100 Gossypium hirsutum HOM05D010097 ORTHO05D011665 1.2e-19 100.9 191 38.7
Gorai.004G233200 Gossypium raimondii HOM05D010097 ORTHO05D011665 1.2e-19 100.9 183 40.4
COL.COLO4_11076 Corchorus olitorius HOM05D010097 ORTHO05D011665 2.0e-19 100.1 186 37.6
Gorai.004G233100 Gossypium raimondii HOM05D010097 ORTHO05D011665 3.2e-17 92.8 188 37.2
Gohir.A08G202150 Gossypium hirsutum HOM05D010097 ORTHO05D011665 2.1e-16 90.1 187 36.9
TWI79G0746 Tripterygium wilfordii HOM05D010097 ORTHO05D011665 6.1e-16 88.6 98 50.0
Gohir.D08G219001 Gossypium hirsutum HOM05D010097 ORTHO05D011665 7.9e-16 88.2 188 36.2
PGR102G2060 Punica granatum HOM05D010097 ORTHO05D011665 2.5e-14 83.2 111 39.6
CDE04G2153 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 4.8e-13 79.0 110 42.7
FvH4_3g39200 Fragaria vesca HOM05D040535 ORTHO05D010376 4.8e-13 79.0 100 43.0
FAN21G3509 Fragaria x ananassa HOM05D040535 ORTHO05D011665 1.1e-12 77.8 100 42.0
FAN11G3028 Fragaria x ananassa HOM05D040535 ORTHO05D011665 3.1e-12 76.3 100 42.0
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 3.1e-12 76.3 120 37.5
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 4.1e-12 75.9 120 37.5
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 9.1e-12 74.7 94 40.4
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 9.1e-12 74.7 139 34.5
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 2.6e-11 73.2 153 32.0
PGSC0003DMG401007810 Solanum tuberosum HOM05D002172 ORTHO05D002167 4.5e-11 72.4 94 36.2
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 7.7e-11 71.6 94 35.1
TWI14G1374 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 1.0e-10 71.2 127 32.3
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 1.7e-10 70.5 147 32.7
Solyc12g010800.2 Solanum lycopersicum HOM05D002172 ORTHO05D002167 1.7e-10 70.5 130 31.5
Sopen12g006170 Solanum pennellii HOM05D002172 ORTHO05D002167 1.7e-10 70.5 130 31.5
Pp3c8_11470 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.2e-10 70.1 108 35.2
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 2.2e-10 70.1 115 34.8
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 2.9e-10 69.7 125 35.2
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 2.9e-10 69.7 101 36.6
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 5.0e-10 68.9 104 36.5
CAN.G318.5 Capsicum annuum HOM05D002172 ORTHO05D002167 6.5e-10 68.6 141 28.4
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 6.5e-10 68.6 94 36.2
Dinv14958 Davidia involucrata HOM05D002172 ORTHO05D002167 6.5e-10 68.6 106 35.8
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 6.5e-10 68.6 105 36.2
Lalb_Chr03g0030941 Lupinus albus HOM05D002172 ORTHO05D002167 8.5e-10 68.2 151 33.8
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 8.5e-10 68.2 101 34.7
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 1.1e-09 67.8 136 35.3
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 1.1e-09 67.8 136 35.3
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 1.1e-09 67.8 136 35.3
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.1e-09 67.8 134 30.6
CDE04G1435 Ceratophyllum demersum HOM05D065581 ORTHO05D002167 1.1e-09 67.8 132 32.6
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 1.1e-09 67.8 134 32.8
Lj3g0018486 Lotus japonicus HOM05D002172 ORTHO05D002167 1.1e-09 67.8 142 31.7
Pp3c2_26970 Physcomitrium patens HOM05D002172 ORTHO05D002167 1.1e-09 67.8 106 37.7
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 1.4e-09 67.4 139 32.4
A05p02920 Brassica napus HOM05D002172 ORTHO05D002167 1.4e-09 67.4 139 32.4
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 1.4e-09 67.4 139 32.4
Pp3c5_20330 Physcomitrium patens HOM05D002172 ORTHO05D002167 1.4e-09 67.4 108 37.0
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 1.4e-09 67.4 94 35.1
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 1.9e-09 67.0 94 36.2
Zm00001eb238570 Zea mays HOM05D002172 ORTHO05D002167 1.9e-09 67.0 94 37.2
Mapoly0019s0040 Marchantia polymorpha HOM05D001917 ORTHO05D002167 2.5e-09 66.6 134 30.6
vmacro11903 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 2.5e-09 66.6 128 33.6
C03p28180 Brassica napus HOM05D002172 ORTHO05D002167 3.2e-09 66.2 149 30.9
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 3.2e-09 66.2 132 28.8
unitig_37.g12563 Utricularia gibba HOM05D002172 ORTHO05D002167 3.2e-09 66.2 109 33.0
MBI15_g40755_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 4.2e-09 65.9 130 29.2
EL10Ac9g20854 Beta vulgaris HOM05D002172 ORTHO05D002167 5.5e-09 65.5 109 33.9
A03p23630 Brassica napus HOM05D002172 ORTHO05D002167 5.5e-09 65.5 116 32.8
BraA03t11579Z Brassica rapa HOM05D002172 ORTHO05D002167 5.5e-09 65.5 116 32.8
Pp3c1_7300 Physcomitrium patens HOM05D000516 ORTHO05D002167 5.5e-09 65.5 100 39.0
Sabra19G0105300 Salix brachista HOM05D002172 ORTHO05D002167 5.5e-09 65.5 111 35.1
HPP92_024329 Vanilla planifolia HOM05D002172 ORTHO05D002167 5.5e-09 65.5 96 35.4
COL.COLO4_14489 Corchorus olitorius HOM05D002172 ORTHO05D002167 1.2e-08 64.3 114 39.5
MD17G1233900 Malus domestica HOM05D002172 ORTHO05D002167 1.2e-08 64.3 145 28.3
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 1.6e-08 63.9 114 34.2
AUR62038993 Chenopodium quinoa HOM05D002172 ORTHO05D002167 2.1e-08 63.5 109 33.0
Ca_18901_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 2.1e-08 63.5 90 36.7
Manes.18G136300 Manihot esculenta HOM05D011591 ORTHO05D010376 2.1e-08 63.5 129 27.9
Ah.01g003880 Amaranthus hybridus HOM05D002172 ORTHO05D002167 2.7e-08 63.2 136 29.4
Pp3c24_10470 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.7e-08 63.2 163 26.4
Pp3c6_7520 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.7e-08 63.2 140 32.1
Duzib147G1659 Durio zibethinus HOM05D002172 ORTHO05D002167 3.6e-08 62.8 136 30.1
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 3.6e-08 62.8 112 33.0
Psat5g275000 Pisum sativum HOM05D002172 ORTHO05D002167 4.7e-08 62.4 77 39.0
THA.LOC104810700 Tarenaya hassleriana HOM05D010097 ORTHO05D011665 4.7e-08 62.4 92 35.9
Haze_24379 Corylus avellana HOM05D028161 ORTHO05D010376 6.1e-08 62.0 175 26.3
Thhalv10016923m.g Eutrema salsugineum HOM05D002172 ORTHO05D002167 6.1e-08 62.0 147 32.0
Nn1g04300 Nelumbo nucifera HOM05D002172 ORTHO05D002167 6.1e-08 62.0 95 32.6
Potri.009G075000 Populus trichocarpa HOM05D020455 ORTHO05D010376 6.1e-08 62.0 136 30.9
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 7.9e-08 61.6 120 30.8
Zm00001eb204490 Zea mays HOM05D002172 ORTHO05D002167 1.0e-07 61.2 80 38.8
Ca_04024_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 1.4e-07 60.8 85 35.3
Pp3c7_23340 Physcomitrium patens HOM05D000516 ORTHO05D002167 1.4e-07 60.8 104 36.5
SHI27683 Sapria himalayana HOM05D002172 ORTHO05D002167 1.4e-07 60.8 91 37.4
SMO367G0542 Selaginella moellendorffii HOM05D002172 ORTHO05D002167 1.4e-07 60.8 104 30.8
CAN.G544.4 Capsicum annuum HOM05D001917 ORTHO05D002790 2.3e-07 60.1 94 35.1
Solyc11g020950.3 Solanum lycopersicum HOM05D001917 ORTHO05D002790 3.9e-07 59.3 93 34.4
Sopen11g011090 Solanum pennellii HOM05D001917 ORTHO05D002790 3.9e-07 59.3 93 34.4
PGSC0003DMG400009283 Solanum tuberosum HOM05D001917 ORTHO05D002790 3.9e-07 59.3 93 34.4
Lj8A152T85 Lonicera japonica HOM05D002172 ORTHO05D002167 5.1e-07 58.9 79 35.4
Ah.04g164430 Amaranthus hybridus HOM05D002172 ORTHO05D007185 6.7e-07 58.5 90 33.3
Lsat_1_v5_gn_9_99081 Lactuca sativa HOM05D002172 ORTHO05D002167 8.8e-07 58.2 105 33.3
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 8.8e-07 58.2 125 32.8
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 1.5e-06 57.4 94 31.9
Aqoxy2G03360 Aquilegia oxysepala HOM05D001917 ORTHO05D002790 1.5e-06 57.4 148 30.4
Sabra09G0056900 Salix brachista HOM05D011591 ORTHO05D010376 1.5e-06 57.4 136 28.7
Rhsim06G0135000 Rhododendron simsii HOM05D002172 ORTHO05D002167 2.6e-06 56.6 112 28.6
Gorai.009G112200 Gossypium raimondii HOM05D020455 ORTHO05D010376 3.3e-06 56.2 122 27.9
Thecc.05G010100 Theobroma cacao HOM05D002172 ORTHO05D002167 3.3e-06 56.2 104 31.7
MSTRG.14946 Avicennia marina HOM05D002172 ORTHO05D002167 4.4e-06 55.8 87 37.9
Gohir.D05G108050 Gossypium hirsutum HOM05D020455 ORTHO05D010376 5.7e-06 55.5 122 27.9
vmacro12360 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 7.4e-06 55.1 112 27.7
DCAR_009765 Daucus carota HOM05D002172 ORTHO05D002167 9.7e-06 54.7 107 30.8
Hma1.2p1_1974F.1_g309630 Hydrangea macrophylla HOM05D010709 ORTHO05D010376 9.7e-06 54.7 126 29.4


User provided reference genes

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